Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00463 ATGAGATGTTCTTGTCGGAAGCGGTTCTTGAAGCGCTTTTTCTCCGACGAGCTCCAAATTAATGGCGGCCTTCAAAGCACTTTTGACCTCTTGCCTTCCCTTGGCGCCTCCATCAGCCACTCTACCAGCCTTCCTAAGCGCATCATTTCCCCTTTCAACCCTTGTTATCGAGCATGGGAGATATGGCTAGTGATTCTAGTGATCTACTCAGCTTGGATATGTCCATTTGAATTTGCCTTTCTTCCCTACAAACAAAATGTTCTTTTTATCTTTGACAACGTTGTCAACGTGTTTTTCGCCGCCGACATCGTTTTAACCTTCTTTGTCGCATATCTCGATGGTCAATCCTATGTTCTCGTCCACGCCCACAAAAAAATAGCACTCAGGTATTTGTCTACTTGGTTTGTTTTGGATGTTTGTTCCACTGCGCCATTACAGTGGATCAGTTTCTTGCTCACGAACCAAACTGGGAAGGCTGGGTTCAAGCTTTTGAACATGCTCCGGCTATGGCGGCTGCGTCGGGTCAGCTCTTTCTTTGCGAGGCTAGAAAAGGACATCAGGTTCAATTATTTCTGGGTCCGTTGCACAAAGCTCATTTCTGTTACATTATTTGCAGTACACTGTGCTGGGTGCTTTAATTTTGTTATAGCCGACAAATATCCTGACCCAAAACGAACATGGATTGGTGCAGCTAACCCTAATTTCAAGGAAGATAGCCTTTGGAATCTCTACGTTACTTCAATTTATTGGTCCATTACCACCTTAACAACCACTGGCTATGGCGATCTCCATGCTGAAAACCCTCAAGAAATGTTGTTTGATATCTTTTACATGCTCTTCAATTTGGGCTTGACTTCTTATCTCATCGGTAACATGACGAATCTCGTCGTTCATCGGACTAGTCGGACCCAAAATTTCAGGGATTCGGTACGAGCTGCGATGGAGTTTGCGTCGAGAAACCAGTTACCGGAAGGGATACGAGACCAAATGTTATCGCACGTATGTCTCAAGTTCAAGACGGAGGGATTGAAGCAGCGAGACACGTTGAATGAGCTTCCGAAAGCTATTAGAGCTTCCATTGCTCATTATCTCTTCTACCCAATTCTTCACAAAGCTTACCTTTTTGAAGGCGTTTCTCATGACTTTCTTTTCCAATTGGTCTCAGATGTGGAGGCCGAGTATTTCCCACCTAAGGAAGATATTATACTCCAAAATGAAGCTCAAACCGATCTCTATATATTGGTCTCGGGCAGTGTGGATCTAATATCGAATATTGAAGGCCACGATAAAGTCATTGGAAGAGCAATAGGTGGAGAAATGTTTGGAGAATTTGGTGTGTTATGTGAAAAGCCTCAACCTTTCAAAGTTCAAACCTCAAAGCTTTCTCAAATATTGAAGCTCAAGAGAGATTCTTTGTTGTATATTATTCAATCAAATTTGGAAGATGGGAATATTATAATGAATAATTTTTTCATGAAAAGGAAGGAATATGAAAGAACGGGCGGTATTTGGAGCGATGGTGAGCTAAAGAAAAATGAAAACCGTTGTGAAGAAGATGATGACGTTATTGAACGACTAGGGGAAATGGGAAAGCGAAGAAACGGGAACGTGGGAAGTTTGGACGAACATCGAATTGAGTTTGATGAGATCGACTCCTTGGAAAATTTGGCGATTAGCTCTTATTTGAATGATTCAAGAGAAATCAAGAAAAGGGTTACTGTACATATGCAGTCTCGAGATGGAAGTAAGGTTGAGAGTCAATATGGGAAGTTAATGCTTCTCCCGGGTTCAGTAGAAGAGCTATGCACAATTGCAGGGGAAAAGTTTGGAGGGAAAATGGCCACAAAAGTTATGAGTGCGGATAATGCAGAAATTGATGATATAAGTGTGATTCGTGACGGTGACCATTTGTTTCTTATTTATAATGATTAA 1932 41.87 MRCSCRKRFLKRFFSDELQINGGLQSTFDLLPSLGASISHSTSLPKRIISPFNPCYRAWEIWLVILVIYSAWICPFEFAFLPYKQNVLFIFDNVVNVFFAADIVLTFFVAYLDGQSYVLVHAHKKIALRYLSTWFVLDVCSTAPLQWISFLLTNQTGKAGFKLLNMLRLWRLRRVSSFFARLEKDIRFNYFWVRCTKLISVTLFAVHCAGCFNFVIADKYPDPKRTWIGAANPNFKEDSLWNLYVTSIYWSITTLTTTGYGDLHAENPQEMLFDIFYMLFNLGLTSYLIGNMTNLVVHRTSRTQNFRDSVRAAMEFASRNQLPEGIRDQMLSHVCLKFKTEGLKQRDTLNELPKAIRASIAHYLFYPILHKAYLFEGVSHDFLFQLVSDVEAEYFPPKEDIILQNEAQTDLYILVSGSVDLISNIEGHDKVIGRAIGGEMFGEFGVLCEKPQPFKVQTSKLSQILKLKRDSLLYIIQSNLEDGNIIMNNFFMKRKEYERTGGIWSDGELKKNENRCEEDDDVIERLGEMGKRRNGNVGSLDEHRIEFDEIDSLENLAISSYLNDSREIKKRVTVHMQSRDGSKVESQYGKLMLLPGSVEELCTIAGEKFGGKMATKVMSADNAEIDDISVIRDGDHLFLIYND 643
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2560657 2565789 + CmaCh18G004630.1 Cma18g00463 313801
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00463 643 SMART cnmp_10 374 491 IPR000595 -
Cma18g00463 643 ProSiteProfiles KHA domain profile. 571 643 IPR021789 -
Cma18g00463 643 Pfam Cyclic nucleotide-binding domain 394 479 IPR000595 -
Cma18g00463 643 Gene3D - 58 297 - -
Cma18g00463 643 PANTHER POTASSIUM CHANNEL AKT1 1 510 IPR045319 GO:0005249|GO:0006813
Cma18g00463 643 PANTHER POTASSIUM CHANNEL AKT1 541 639 IPR045319 GO:0005249|GO:0006813
Cma18g00463 643 CDD CAP_ED 374 487 IPR000595 -
Cma18g00463 643 PRINTS EAG/ELK/ERG potassium channel family signature 69 76 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma18g00463 643 PRINTS EAG/ELK/ERG potassium channel family signature 92 102 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma18g00463 643 PRINTS EAG/ELK/ERG potassium channel family signature 103 112 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma18g00463 643 PRINTS EAG/ELK/ERG potassium channel family signature 244 261 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma18g00463 643 PRINTS EAG/ELK/ERG potassium channel family signature 270 281 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma18g00463 643 PRINTS EAG/ELK/ERG potassium channel family signature 288 297 IPR003938 GO:0005249|GO:0006813|GO:0016020
Cma18g00463 643 PANTHER POTASSIUM CHANNEL KAT1 1 510 - -
Cma18g00463 643 PANTHER POTASSIUM CHANNEL KAT1 541 639 - -
Cma18g00463 643 SUPERFAMILY cAMP-binding domain-like 301 490 IPR018490 -
Cma18g00463 643 Pfam KHA, dimerisation domain of potassium ion channel 570 639 IPR021789 -
Cma18g00463 643 Pfam Ion transport protein 57 303 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma18g00463 643 SUPERFAMILY Voltage-gated potassium channels 51 297 - -
Cma18g00463 643 Gene3D Jelly Rolls 342 501 IPR014710 -
Cma18g00463 643 ProSiteProfiles cAMP/cGMP binding motif profile. 374 493 IPR000595 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00555 Cma18g00463 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00383 Cma-Chr16:1848720 Cma18g00463 Cma-Chr18:2560657 4.59E-173 dispersed
Cma13g00555 Cma-Chr13:5665470 Cma18g00463 Cma-Chr18:2560657 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00463 K21867 - csv:101215858 968.378