Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00483 ATGTTTCATCTTCAACGATCAAAATCCATTACTCAAAGTCCCATTTTCCGTTTCAAATTCCCGAATTTTCCTGCCACCCAATCAAGACTGCTCAACACGCTTTCATCTCTGTTCAGTCGATGCAAATCTCGTCAACAGCTCGAGCAAATTCACGCCAGGTTCGTCCTCCATGGTTTCCACCAAAACCCAACTCTCTCTTGCAAACTCATTGACTGCTATGCGAATTTTGGACTCCTTAATGTCTCTCACCATGTTTTCAATTCTATAATCGATCCCAATTCGACTCTTTACAATGCTATTCTGAGAAATTTGACTAGATTTGGTGAATATGAGCGCACCCTGTTGGTGTACAGGGAAATGGTTGCTAAGTCCATGCACCCGGATGAACAAACTTACCCTTTTGTTTTGCAATCATGTTGTTGTTTGTCAAATGTTGAATTTGGGAAGAACATTCATGGGTGTTTGATAAAGCTTGGTGTTGATTCTTATGATACGGTTGTTACTGTTCTGGCTGAGATGTACGGAAAGTGCATTGATTTTGAGAATGCACATCAACTGTTTGATAAAATGTCTGTGAAGGATTTGGACTGCTGGAGTTCATTGATTTCAGAAGCGCCTCAAAATGGGAATGGGGACGAAATTTCCCTGCTCTTAGGGAGGATGAAATCAGAGCCATTAGTGACAGACTCACTCACATTTATCAATCTCTTGAGGTCTATTTCGGGTTTAAGTTCAATTCAGCTTGCAAAAATTGTTCATTGTATTGCAATTGTGAGCAACTTATGTGGAGATTTGTTGGTAGATACTGCCGTGTTGTCTCTTTACTCCAAGTTAGGTAGCTTAGTAGATGCTCGCAAGTTATTTGAAAAAATGCCTGAAAAGGATCGTGTTGTATGGAATATAATGATAGCAGCTTATGCTCGAGAAGGACGACCAATGGAATGTCTCGAGCTTTTCGAGTCCATGGCACGATCCGGGATTAGAGCCGATCTATTTACTGCGCTTCCTGTTATCTCTTCGATTTCACAGCTGAAATGTGCTGATTGGGGCAAACAAACCCATGCCAACATATTGAGAAATGGTTCAGATAGTCAAGTTTCAGTTCATAATTCTCTCATAGACATGTACTGCGAGTGTAACAGCTTAGAGTCAGCTTGTAAGATCTTCAACTCGGTCACAAACAAGACTGTAATTTCATGGAGTGCTATGATCAAGGGGAATGTCAAACATGGTTATCCTCTCATTGCTTTGTCTCTGTTCTTCATGATGAAATCTGATGGGATTCAAGCTGATTTCATTACAGTGATCAATATCATGCCTGCATTTGTTGACATAGGAGCACTTGAAAATGTCAAATATTTACATGGGTACTCATTGAAGCTAGCCCTGACTTCCCTGCCATCCCTTAACACAGCCCTCCTAATCACCTATGCAAAATGTGGGTGTATAGAGATGGCCCAGAGGCTATTTGAGGAAGAGAGAGTTAATGACAAAGATTTGATAATGTGGAACTCCATGATCAGTGCTCATGCCAACCATGGAGATTGGTCTCAATGTTTCAAGCTATACAATCAAATGAAGTGCTCAAATTCAAACCCAGATCAGGTAACATTTCTCGGACTACTAACAGCGTGCGTCAACTCCGGTCTCGTCGAAAAGGGAAAGGAGTTTTTCAAGGAGATGATTGAAAGTTATAGCTGCCAACCAAGTCAAGAACATTATGCTTGTATGGTTAATCTCTTAGGGAGAGCTGGGCTTATCAATGAAGCTGGAGAACTTGTAAGAAACATGCCGATCAAACCCGACGCTCGAGTTTGGGGTCCATTGTTGAGTGCTTGTAAGTTGCATCCTGGGTCTAAGCTTGCGGAGTTTGCGGCCGAGAAGCTCATCGATATGGAGCCGAAAAACGCAGGGAATTACATATTGCTTTCAAACATATATGCTGCTGCAGGTAAATGGGATGGAGTGGCTAAAATGAGAAGTTTCCTTAGGGATAAAGGGCTGAAGAAGACCCCTGGTTGTAGTTGGCTGGAGATCAATGGCCGTGTAGCCGAGTTTCGTGTTGCTGATCGAACTCATCCGAGAGCCGAAGATATCTATGCCATTCTGGGAAACCTTGAACTTGATATCAAAGAGGCTAAAGAAATGAGTCCAGAAAAACTGGGTACTCTTCTGTAA 2178 42.01 MFHLQRSKSITQSPIFRFKFPNFPATQSRLLNTLSSLFSRCKSRQQLEQIHARFVLHGFHQNPTLSCKLIDCYANFGLLNVSHHVFNSIIDPNSTLYNAILRNLTRFGEYERTLLVYREMVAKSMHPDEQTYPFVLQSCCCLSNVEFGKNIHGCLIKLGVDSYDTVVTVLAEMYGKCIDFENAHQLFDKMSVKDLDCWSSLISEAPQNGNGDEISLLLGRMKSEPLVTDSLTFINLLRSISGLSSIQLAKIVHCIAIVSNLCGDLLVDTAVLSLYSKLGSLVDARKLFEKMPEKDRVVWNIMIAAYAREGRPMECLELFESMARSGIRADLFTALPVISSISQLKCADWGKQTHANILRNGSDSQVSVHNSLIDMYCECNSLESACKIFNSVTNKTVISWSAMIKGNVKHGYPLIALSLFFMMKSDGIQADFITVINIMPAFVDIGALENVKYLHGYSLKLALTSLPSLNTALLITYAKCGCIEMAQRLFEEERVNDKDLIMWNSMISAHANHGDWSQCFKLYNQMKCSNSNPDQVTFLGLLTACVNSGLVEKGKEFFKEMIESYSCQPSQEHYACMVNLLGRAGLINEAGELVRNMPIKPDARVWGPLLSACKLHPGSKLAEFAAEKLIDMEPKNAGNYILLSNIYAAAGKWDGVAKMRSFLRDKGLKKTPGCSWLEINGRVAEFRVADRTHPRAEDIYAILGNLELDIKEAKEMSPEKLGTLL 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2743703 2745880 - CmaCh18G004830.1 Cma18g00483 313821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 536 570 IPR002885 -
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 96 129 IPR002885 -
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 501 534 IPR002885 -
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 564 IPR002885 -
Cma18g00483 725 Pfam E motif 620 678 IPR046848 -
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 469 697 IPR011990 GO:0005515
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 24 146 IPR011990 GO:0005515
Cma18g00483 725 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 720 - -
Cma18g00483 725 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 166 254 - -
Cma18g00483 725 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 166 - -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Cma18g00483 725 Pfam PPR repeat family 92 140 IPR002885 -
Cma18g00483 725 Pfam PPR repeat family 499 546 IPR002885 -
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 155 247 IPR011990 GO:0005515
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 248 348 IPR011990 GO:0005515
Cma18g00483 725 Pfam PPR repeat 369 391 IPR002885 -
Cma18g00483 725 Pfam PPR repeat 297 327 IPR002885 -
Cma18g00483 725 Pfam PPR repeat 398 428 IPR002885 -
Cma18g00483 725 Pfam PPR repeat 269 294 IPR002885 -
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 358 456 IPR011990 GO:0005515
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Cma18g00483 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 257 720 - -
Cma18g00483 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 166 - -
Cma18g00483 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 166 254 - -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00483 Cma-Chr18:2743703 Cma13g00591 Cma-Chr13:5857946 6.58E-06 dispersed
Cma18g00483 Cma-Chr18:2743703 Cma18g00835 Cma-Chr18:7304105 2.14E-141 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00483 - - bhj:120082790 1222.61