Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00483 ATGTTTCATCTTCAACGATCAAAATCCATTACTCAAAGTCCCATTTTCCGTTTCAAATTCCCGAATTTTCCTGCCACCCAATCAAGACTGCTCAACACGCTTTCATCTCTGTTCAGTCGATGCAAATCTCGTCAACAGCTCGAGCAAATTCACGCCAGGTTCGTCCTCCATGGTTTCCACCAAAACCCAACTCTCTCTTGCAAACTCATTGACTGCTATGCGAATTTTGGACTCCTTAATGTCTCTCACCATGTTTTCAATTCTATAATCGATCCCAATTCGACTCTTTACAATGCTATTCTGAGAAATTTGACTAGATTTGGTGAATATGAGCGCACCCTGTTGGTGTACAGGGAAATGGTTGCTAAGTCCATGCACCCGGATGAACAAACTTACCCTTTTGTTTTGCAATCATGTTGTTGTTTGTCAAATGTTGAATTTGGGAAGAACATTCATGGGTGTTTGATAAAGCTTGGTGTTGATTCTTATGATACGGTTGTTACTGTTCTGGCTGAGATGTACGGAAAGTGCATTGATTTTGAGAATGCACATCAACTGTTTGATAAAATGTCTGTGAAGGATTTGGACTGCTGGAGTTCATTGATTTCAGAAGCGCCTCAAAATGGGAATGGGGACGAAATTTCCCTGCTCTTAGGGAGGATGAAATCAGAGCCATTAGTGACAGACTCACTCACATTTATCAATCTCTTGAGGTCTATTTCGGGTTTAAGTTCAATTCAGCTTGCAAAAATTGTTCATTGTATTGCAATTGTGAGCAACTTATGTGGAGATTTGTTGGTAGATACTGCCGTGTTGTCTCTTTACTCCAAGTTAGGTAGCTTAGTAGATGCTCGCAAGTTATTTGAAAAAATGCCTGAAAAGGATCGTGTTGTATGGAATATAATGATAGCAGCTTATGCTCGAGAAGGACGACCAATGGAATGTCTCGAGCTTTTCGAGTCCATGGCACGATCCGGGATTAGAGCCGATCTATTTACTGCGCTTCCTGTTATCTCTTCGATTTCACAGCTGAAATGTGCTGATTGGGGCAAACAAACCCATGCCAACATATTGAGAAATGGTTCAGATAGTCAAGTTTCAGTTCATAATTCTCTCATAGACATGTACTGCGAGTGTAACAGCTTAGAGTCAGCTTGTAAGATCTTCAACTCGGTCACAAACAAGACTGTAATTTCATGGAGTGCTATGATCAAGGGGAATGTCAAACATGGTTATCCTCTCATTGCTTTGTCTCTGTTCTTCATGATGAAATCTGATGGGATTCAAGCTGATTTCATTACAGTGATCAATATCATGCCTGCATTTGTTGACATAGGAGCACTTGAAAATGTCAAATATTTACATGGGTACTCATTGAAGCTAGCCCTGACTTCCCTGCCATCCCTTAACACAGCCCTCCTAATCACCTATGCAAAATGTGGGTGTATAGAGATGGCCCAGAGGCTATTTGAGGAAGAGAGAGTTAATGACAAAGATTTGATAATGTGGAACTCCATGATCAGTGCTCATGCCAACCATGGAGATTGGTCTCAATGTTTCAAGCTATACAATCAAATGAAGTGCTCAAATTCAAACCCAGATCAGGTAACATTTCTCGGACTACTAACAGCGTGCGTCAACTCCGGTCTCGTCGAAAAGGGAAAGGAGTTTTTCAAGGAGATGATTGAAAGTTATAGCTGCCAACCAAGTCAAGAACATTATGCTTGTATGGTTAATCTCTTAGGGAGAGCTGGGCTTATCAATGAAGCTGGAGAACTTGTAAGAAACATGCCGATCAAACCCGACGCTCGAGTTTGGGGTCCATTGTTGAGTGCTTGTAAGTTGCATCCTGGGTCTAAGCTTGCGGAGTTTGCGGCCGAGAAGCTCATCGATATGGAGCCGAAAAACGCAGGGAATTACATATTGCTTTCAAACATATATGCTGCTGCAGGTAAATGGGATGGAGTGGCTAAAATGAGAAGTTTCCTTAGGGATAAAGGGCTGAAGAAGACCCCTGGTTGTAGTTGGCTGGAGATCAATGGCCGTGTAGCCGAGTTTCGTGTTGCTGATCGAACTCATCCGAGAGCCGAAGATATCTATGCCATTCTGGGAAACCTTGAACTTGATATCAAAGAGGCTAAAGAAATGAGTCCAGAAAAACTGGGTACTCTTCTGTAA 2178 42.01 MFHLQRSKSITQSPIFRFKFPNFPATQSRLLNTLSSLFSRCKSRQQLEQIHARFVLHGFHQNPTLSCKLIDCYANFGLLNVSHHVFNSIIDPNSTLYNAILRNLTRFGEYERTLLVYREMVAKSMHPDEQTYPFVLQSCCCLSNVEFGKNIHGCLIKLGVDSYDTVVTVLAEMYGKCIDFENAHQLFDKMSVKDLDCWSSLISEAPQNGNGDEISLLLGRMKSEPLVTDSLTFINLLRSISGLSSIQLAKIVHCIAIVSNLCGDLLVDTAVLSLYSKLGSLVDARKLFEKMPEKDRVVWNIMIAAYAREGRPMECLELFESMARSGIRADLFTALPVISSISQLKCADWGKQTHANILRNGSDSQVSVHNSLIDMYCECNSLESACKIFNSVTNKTVISWSAMIKGNVKHGYPLIALSLFFMMKSDGIQADFITVINIMPAFVDIGALENVKYLHGYSLKLALTSLPSLNTALLITYAKCGCIEMAQRLFEEERVNDKDLIMWNSMISAHANHGDWSQCFKLYNQMKCSNSNPDQVTFLGLLTACVNSGLVEKGKEFFKEMIESYSCQPSQEHYACMVNLLGRAGLINEAGELVRNMPIKPDARVWGPLLSACKLHPGSKLAEFAAEKLIDMEPKNAGNYILLSNIYAAAGKWDGVAKMRSFLRDKGLKKTPGCSWLEINGRVAEFRVADRTHPRAEDIYAILGNLELDIKEAKEMSPEKLGTLL 725
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2743703 2745880 - CmaCh18G004830.1 Cma18g00483 313821

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 536 570 IPR002885 -
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 96 129 IPR002885 -
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 501 534 IPR002885 -
Cma18g00483 725 TIGRFAM PPR: pentatricopeptide repeat domain 297 330 IPR002885 -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 534 564 IPR002885 -
Cma18g00483 725 Pfam E motif 620 678 IPR046848 -
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 469 697 IPR011990 GO:0005515
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 24 146 IPR011990 GO:0005515
Cma18g00483 725 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 257 720 - -
Cma18g00483 725 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 166 254 - -
Cma18g00483 725 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 1 166 - -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 93 127 IPR002885 -
Cma18g00483 725 Pfam PPR repeat family 92 140 IPR002885 -
Cma18g00483 725 Pfam PPR repeat family 499 546 IPR002885 -
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 155 247 IPR011990 GO:0005515
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 248 348 IPR011990 GO:0005515
Cma18g00483 725 Pfam PPR repeat 369 391 IPR002885 -
Cma18g00483 725 Pfam PPR repeat 297 327 IPR002885 -
Cma18g00483 725 Pfam PPR repeat 398 428 IPR002885 -
Cma18g00483 725 Pfam PPR repeat 269 294 IPR002885 -
Cma18g00483 725 Gene3D Tetratricopeptide repeat domain 358 456 IPR011990 GO:0005515
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 499 533 IPR002885 -
Cma18g00483 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 257 720 - -
Cma18g00483 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 166 - -
Cma18g00483 725 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 166 254 - -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Cma18g00483 725 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 295 329 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00483 - - - bhj:120082790 1222.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00483 Cma-Chr18:2743703 Cma13g00591 Cma-Chr13:5857946 6.58E-06 dispersed
Cma18g00483 Cma-Chr18:2743703 Cma18g00835 Cma-Chr18:7304105 2.14E-141 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g55 . . . . . . . . . . . Cma18g00483 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012837 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 0 0 0 1 1 1 1 0 1 0 1 1 0 0 0 21
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00483 Cma_Chr18 FPKM 1.231864 0.485529 0.787064 1.154614 1.835053 1.641568 1.630948 0.861208 0.555384 1.014381