Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00491 ATGAGGCTCTCTGCGGCTGGGTTTAGTCCTCAGGCTCCTGAAGGTGAGAGGAGGGTCCTGAATTCTGAGCTTTGGCATGCGTGTGCGGGTCCTCTTGTCTCTCTTCCGGCTGTTGGGAGTCGGGTTGTTTATTTTCCTCAAGGACATAGTGAGCAGGTTACTGCATCTACCAATAAAGAGGTGGATACTCAGATCCCAAATTACCCAAGTTTACCGCCGCAGCTCATCTGTCAACTTCACAACTTGACAATGCATGCGGATGCTGACACTGATGAAGTATATGCTCAGATGACTTTGCAACCCTTGAGTGCTCAAGAATTGAAAGAAGCCTACCTTCCAGCTGAGTTGGGCACTCCAAGTAGGCAGCCAACAAATTACTTTTGCAAAACTTTGACAGCCAGTGATACCAGCACACATGGGGGGTTTTCGGTTCCTCGCCGTGCTGCTGAAAAAGTATTTCCTCCTTTGGACTTCTCCATGCAGCCTCCAGCCCAAGAGCTGATTGCGAGGGACCTACATGATAATGAGTGGAAATTTAGACATATTTTTCGTGGCCAGCCTAAAAGACACCTTCTAACAACTGGATGGAGTGTCTTTGTGAGCGCTAAACGACTCGTTGCTGGTGATGCTGTGCTTTTTATCTGGAATGAAAAGAACCAATTACTCCTTGGAATCAGGCGTGCAAGTCGACCGCAAACCGTGATGCCTTCATCTGTTTTGTCGAGTGATAGCATGCATTTAGGACTCCTTGCTGCTGCAGCCCATGCAGCTGCTACCAATAGTCGGTTTACCATATTCTTTAACCCGAGGGCTAGCCCTTCAGAGTTTGTCATACCACTGGCCAAATATGTGAAGGCAGTCTACCATACTCGTGTTTCTGTCGGGATGCGCTTTCGGATGCTGTTTGAAACAGAAGAATCAAGTGTTCGTCGCTACATGGGAACAATCACTGGCATTAGTGACTTGGATCCTGTAAGATGGCAAAATTCGCATTGGCGCTCGGTCAAGGTTGGCTGGGATGAGTCAACAGCCGGAGAGCGGCAGCCAAGAGTGTCCTTGTGGGAAATCGAACCATTAACCACATTTCCAATGTATCCATCACCGTTTCCACTTCGACTGAAGCGACAATGGCCAACCGGACTGCCTTCGTTTGGCATCAAGGATAGTGACATCGGAATGAATTCTCCGTTCATGTGGCTCCGGGGAGATAACAGCGATCGTGGCATCCAGTGTCTAAACTTTCAGGGAAATGGGGTCTCACCATGGATGCATCCGAGGCTTGATCCATCCATGGTCGGTATGCAATCCGACATGTATCAAGCCATGGCTGCTGCAGCGCTTCAGGAGATGAGAGCAATCGATTATTCCAAACTAGCGCCTGCATCGATGCTGCAATTTCAGCAGCCTCAAGGTTTCCCTTGTCAGCCTTCAACCTTAATGCAGCCTCAGATGTTGCATCAGTCTCAATCTCAGCACGCGTTTCTGCAATCTGTTCAAGAACATCAGCAGCATTCTCAGTCCCAAACTCAAACTCAGTCACATCACCTTCAGCCACAATTGCAGCCCGAGCCGTCGTTCAATAATCAACAACCGCAGCATCAACAGCAACCAAGACAGCCACAGCCATCGCCACAGCCACAGCCACTGGTTGGTCATCAACCGATTCCTTGTACAATCCCTGCTATATCTCAGTTCGCTTCATGTTCACAATCCCAATCACCGTCCCTGCAAACTGTCCCTTCCCTTTGCCAACAACCAAGTTTTTCCGATTCCAATGGTAACCCTGTAACCAGTCCTACTGTTTCTCCATTCCATAGTCTTGCAGGGTCATTTGTCCAAGACGAATCGTCTCAGCTGCTTAACATTCAACGAGCAAATTCAGTAATTTCTTCAGCTGGTTGGCCATCAAAGAGGGCTGCTATTGACCCTCTCTCTACTGGAGTTTCTCAGTTCTTTCTTCCTCAAGTAGAAAGTGGTATGTCTCAGAATACGGTTGCATTGCCACCCTTCCCCGGAAGGGAGTGTGCTATCGGTGATCGAGATGAGGGTTCGGATCCAGAAAACCATGTTTTATTTGGTGTGAACATAGAGTCTTCATCCCTTCTAATGCAGAATGGGATGTCGAACCTTAGGGGAGTTGGCAATGATAATGTTTCCACAACACTACCTTTTTCTTCCAACTACATGAGCTCATCCGGTACCGATTTTTCCGTAAATCCAACAACAAATTGCGTCGACGAATCGGGTTTCTTGCAGCCTCATGAAAACGTGGGCCAAGTAAACCAACCAAATGGAACTTTTGTCAAGGTTCATAAATCAGGGACCTACAGTAGGTCCTTGGATATAACAAAATTCAACAACTACCTCGAGCTACGCAGTGAGCTTGCTCGCATGTTTGGCCTAGAAGGCGAGTTGGAGGATCCTTTGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAACGACGTTCTTCTCCTTGGGGATGGCCCGTGGCCGGAGTTCGTAAACAGTGTATGGTGTATCAAAATACTTTCACCCGACGAAGTTCAGGAAATGGGGAAGCGTGGTTTAGAACTTCTCAACTCTGTGCCAATCCAGAGGCTTTCGAACAATACCTGTGACGACTACGGTAGCCGACAGGACTCAAGAAATTTGATATCAGGGATAACCTCTGTCGGTCCTTTCGACTACTGA 2697 48.05 MRLSAAGFSPQAPEGERRVLNSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVTASTNKEVDTQIPNYPSLPPQLICQLHNLTMHADADTDEVYAQMTLQPLSAQELKEAYLPAELGTPSRQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSMQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDAVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFFNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRQWPTGLPSFGIKDSDIGMNSPFMWLRGDNSDRGIQCLNFQGNGVSPWMHPRLDPSMVGMQSDMYQAMAAAALQEMRAIDYSKLAPASMLQFQQPQGFPCQPSTLMQPQMLHQSQSQHAFLQSVQEHQQHSQSQTQTQSHHLQPQLQPEPSFNNQQPQHQQQPRQPQPSPQPQPLVGHQPIPCTIPAISQFASCSQSQSPSLQTVPSLCQQPSFSDSNGNPVTSPTVSPFHSLAGSFVQDESSQLLNIQRANSVISSAGWPSKRAAIDPLSTGVSQFFLPQVESGMSQNTVALPPFPGRECAIGDRDEGSDPENHVLFGVNIESSSLLMQNGMSNLRGVGNDNVSTTLPFSSNYMSSSGTDFSVNPTTNCVDESGFLQPHENVGQVNQPNGTFVKVHKSGTYSRSLDITKFNNYLELRSELARMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPDEVQEMGKRGLELLNSVPIQRLSNNTCDDYGSRQDSRNLISGITSVGPFDY 898
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2810959 2820224 - CmaCh18G004910.1 Cma18g00491 313829
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00491 898 SMART B3_2 127 229 IPR003340 GO:0003677
Cma18g00491 898 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Cma18g00491 898 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Cma18g00491 898 Coils Coil 898 898 - -
Cma18g00491 898 ProSiteProfiles PB1 domain profile. 765 849 IPR000270 GO:0005515
Cma18g00491 898 MobiDBLite consensus disorder prediction 537 553 - -
Cma18g00491 898 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 877 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma18g00491 898 SUPERFAMILY CAD & PB1 domains 754 840 - -
Cma18g00491 898 PANTHER AUXIN RESPONSE FACTOR 6 1 877 - -
Cma18g00491 898 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma18g00491 898 Gene3D - 761 854 - -
Cma18g00491 898 MobiDBLite consensus disorder prediction 483 555 - -
Cma18g00491 898 Gene3D - 291 363 - -
Cma18g00491 898 CDD B3_DNA 126 227 IPR003340 GO:0003677
Cma18g00491 898 Pfam AUX/IAA family 758 854 IPR033389 -
Cma18g00491 898 Gene3D - 125 228 IPR015300 -
Cma18g00491 898 MobiDBLite consensus disorder prediction 483 536 - -
Cma18g00491 898 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01429 Cma18g00491 CCT
Cma13g00511 Cma18g00491 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00776 Cma-Chr15:3829460 Cma18g00491 Cma-Chr18:2810959 0 dispersed
Cma13g00511 Cma-Chr13:5418480 Cma18g00491 Cma-Chr18:2810959 0 wgd
Cma18g00491 Cma-Chr18:2810959 Cma03g01429 Cma-Chr3:8950035 0 wgd
Cma18g00491 Cma-Chr18:2810959 Cma07g00079 Cma-Chr7:469263 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36772 PF02309 AUX_IAA 1.10E-06 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00491 - - csv:101211705 1557.35