Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00495 ATGTTAGAAGAGCTCGCTCGAGGATCAGACGCGGAGTTAGGTTACGAAGCAGCCGTTAATTCGAATTCGAGTCAGAACTCTATGAGCAGTGAAAGTTGTAGTAGCTTCAGTCGTCTCTCGTTTGATGCTGCGATTGATTTTCCTACCTCCCGATTCTCGCCGGAGAGTCTCGATTTGAAGCCTCACCGATCGTCTGATTTCGCTTACTCCGCCATTCGTCGCCGGAAATCCAAGCTTACTTTCCGTGATTTTCGGCTTCTCCGTCGCATCGGCGCTGGCGACATTGGTACGGTTTATCTATGTCAGTTGCGGAAATTGACCGACGGTGGCTATGACGATGAATACGACGATTCGTGTTTGTACGCGATGAAAGTGGTGGATAAAGAAGCGTTGGAATTGAAGAAGAAGGTGCAGAGGGCGGAAATGGAGAGAAAAATACTGAAGATGCTGGATCATCCGTTTTTGCCTACTCTTTACGCTGAGTTTGAGGCGTCTCATTTCTCTTGCATCGTCATGGAGTTCTGTTCCGGCGGTGACTTGCATTCTCTCCGCCATAAACAGCCGCGTAAACGCTTCTCTCTCAGCTCCGCAAGGTTTTATGCTGCTGAAGTTCTCGTTGCTTTAGAGTACCTTCACATGCTTGGAATCATCTACAGAGATCTTAAGCCGGAGAATGTCCTTGTCCGATCGGACGGTCACATCATGCTGTCGGATTTCGATCTATCTCTCTGCTCGGATGCCACTCCGGCTGTTGAATCGCCGGATTCTTCCCCAAATCCGGCCTTCCCCGATGCGATGGCGTACCCCAAAACTAACACAATACCCACCGCCTCCGCCGCTACTACCAGCCCTTTTTCCTGCTTTTACAACCGGCTTTTCCGGTCACGCAAGGTCCAAACCCTGACCCCGAACTGGCTCTTCGTTGCCGAGCCCGTCTCCGCCCGGTCCTGCTCCTTTGTCGGTACTCACGAGTATGTCTCGCCGGAAGTAGCCGCCGGCGGGTCACACGGCAACGCTGTTGACTGGTGGGCTTTTGGCGTATTTCTCTATGAGTTGATCTTCGGCCGGACGCCGTTTGCAGCCTCATCCAATGAGACGACGCTAAGGAACATCATAAAGAAGCCGTTGACGTTCCCGACCGCCGAGACTTCCGGCGCGCTTGAGCACCACGCGCGGGATCTAATATCCGGTTTGCTCAACAAGGACCCGACCCGGAGATTGGGTTCAAAACGCGGGTCTGCCGACATTAAGAAGCATCCGTTCTTCAAAGGCCTTAACCTCGCCCTCATTCGGTCTCTCACGCCGCCAGAGGTCCCCGGCGTACGACGGCGGAAGGCGACGCCGGTGGCCAAATCCATGGAAAAGGCAGCTGATTCGGCCGGGTTCGATTACTTCTGA 1398 53.43 MLEELARGSDAELGYEAAVNSNSSQNSMSSESCSSFSRLSFDAAIDFPTSRFSPESLDLKPHRSSDFAYSAIRRRKSKLTFRDFRLLRRIGAGDIGTVYLCQLRKLTDGGYDDEYDDSCLYAMKVVDKEALELKKKVQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKQPRKRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESPDSSPNPAFPDAMAYPKTNTIPTASAATTSPFSCFYNRLFRSRKVQTLTPNWLFVAEPVSARSCSFVGTHEYVSPEVAAGGSHGNAVDWWAFGVFLYELIFGRTPFAASSNETTLRNIIKKPLTFPTAETSGALEHHARDLISGLLNKDPTRRLGSKRGSADIKKHPFFKGLNLALIRSLTPPEVPGVRRRKATPVAKSMEKAADSAGFDYF 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 2891742 2894017 - CmaCh18G004950.1 Cma18g00495 313833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00495 465 Gene3D Transferase(Phosphotransferase) domain 1 175 242 - -
Cma18g00495 465 Gene3D Transferase(Phosphotransferase) domain 1 315 440 - -
Cma18g00495 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Cma18g00495 465 PANTHER FLIPPASE KINASE 1-RELATED 2 448 - -
Cma18g00495 465 SMART serkin_6 84 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00495 465 ProSiteProfiles Protein kinase domain profile. 84 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00495 465 Pfam Protein kinase domain 85 243 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00495 465 Pfam Protein kinase domain 316 422 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00495 465 Coils Coil 123 150 - -
Cma18g00495 465 Gene3D Phosphorylase Kinase; domain 1 82 174 - -
Cma18g00495 465 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 2 448 - -
Cma18g00495 465 SUPERFAMILY Protein kinase-like (PK-like) 66 438 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma13g00505 Cma18g00495 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00495 Cma-Chr18:2891742 Cma13g00321 Cma-Chr13:3713637 1.40E-134 dispersed
Cma13g00505 Cma-Chr13:5383852 Cma18g00495 Cma-Chr18:2891742 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69291 PF00069 Pkinase 3.80E-32 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00495 - - csv:101208129 758.444