Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00506 ATGGGTCAATCGAACGGTGACGTCGGTGGTGGAGAAGGGATCAGAAGAAGATCCTGTAGTTGTTCAAAGGAAGATTTTCTGCCAGAGGAGTCGTTTAAGAGTTGGGGAAATTACACTAAAGCGCTGAAGGCGACGCCGGCCCGGCTCTTGGATCGGCTCACGGCCAGGTCCGGAGAGCACACCGAGCTCGTCGAGATGAAGGCTCAAAGCCAGCACGAGATGAAGAAGAGCCTCACGTGGTGGGACCTTATGTGGTTCGGTATTGGCGCCGTCATCGGCGCTGGAATATTCGTCCTCACTGGTCTCGAGACTAAGAAACATGCCGGCCCAGCCGTGGTCTTGTCTTATGTCGTCTCCGGTGTCTCCGCCATGCTTTCCGTCTTCTGTTACACTGAGTTCGCTGTCGAGATCCCAGCAGCGGGTGGATCATTCGCGTACCTCAGGGTAGAACTAGGAGACTTCGTGGCATTCATCGCGGCAGGCAACATCCTCCTCGAATATGTAATTGGCGGCGCTGCTGTGGCCCGTTCATGGACTTCATACTTTGCCACTTTGTGCAATCACCATCCAAACGATTTTCGCATCCACGTCTCGTCTTTCCCCGACGACTACAACCAGCTCGACCCCATTGCCATCGTTGTGATCATCGCCATTTGTACCCTGGCTGTAGTCAGCACCAAGGGCTCCTCCCGCTTCAACTACATTGCTTCCATTTTCCACGTTGCCATCATCCTCTTCATTGTCATTGCTGGCCTCACCAAGGCCAACCCGAAAAACTTCACTCCCTTTGCCCCCTATGGCCCTCGTGGCATCTTCGTAGCCTCGGCTGTTTTGTTCTTTGCATACGTTGGATTCGACGCCGTTTCGACCATGGCTGAGGAAACTAAGAACCCTGCTAAAGATATACCTATTGGTCTTGTTGGGTCCATGGTGATCACCACGTTAGCCTATTGCATTCTTGCGGTTACGTTGTGCTTGATGCAGCCGTACCAACAAATTGACGAGGACGCTCCGTTTTCAGTGGCTTTTGAGGCTGTTGGATGGGGTTGGGCTAAGTACATTGTGGCTGCTGGTGCTATTAAAGGCATGACCACCGTGTTGTTGGTTAGTGCTGTTGGACAGGCACGCTATCTCACGCACATTGCCAGAACCCACATGATCTCACCATGGTTCGCCAAAGTGCATGAAAGGACTGGCACTCCAGTGAATGCAACAGCCACAATGCTCGCTGCAACAGCAATAATCGCCTTCTTTACAAGCTTGGGAATCCTCTCAAACCTCCTCTCTATCTCCACCCTCTTCATCTTCATGCTAGTAGCCGTGGGTCTGATCGTCCGACGCTACTACGTCAGCGGTGAAACAACACCATCCGACCGAAACAAGCTCATAATCTGCATTGTTCTAATCCTGGGATCTTCAATAGCAACCGCCGTATACTGGGGCTCGAGCGATGGCTGGATCGGCTTGGTAGTGTCCAATTCCATATGGTTTCTCTCAACTCTAGCCCTATGGCTCGGCGTCCCACAGGCCAAAAAGCCTCGCGTGTGGGGTGTGCCGCTCGTCCCGTGGGTGCCTTCATTGTCAATCGCCATCAACCTTTTCCTTCTTGGGTCGATCGACAAAGCTTCATTTGAAAGGTTTGGAATCTGGACTGGGATTTTGTTGGTTTACTATTTCTTGATTGGATTACATGCTTCTTATGATTCGGTCATGGAGTCCAAGACAGTAGCCGGAGAAGTTAATAGCAGTTTGTGA 1755 51.68 MGQSNGDVGGGEGIRRRSCSCSKEDFLPEESFKSWGNYTKALKATPARLLDRLTARSGEHTELVEMKAQSQHEMKKSLTWWDLMWFGIGAVIGAGIFVLTGLETKKHAGPAVVLSYVVSGVSAMLSVFCYTEFAVEIPAAGGSFAYLRVELGDFVAFIAAGNILLEYVIGGAAVARSWTSYFATLCNHHPNDFRIHVSSFPDDYNQLDPIAIVVIIAICTLAVVSTKGSSRFNYIASIFHVAIILFIVIAGLTKANPKNFTPFAPYGPRGIFVASAVLFFAYVGFDAVSTMAEETKNPAKDIPIGLVGSMVITTLAYCILAVTLCLMQPYQQIDEDAPFSVAFEAVGWGWAKYIVAAGAIKGMTTVLLVSAVGQARYLTHIARTHMISPWFAKVHERTGTPVNATATMLAATAIIAFFTSLGILSNLLSISTLFIFMLVAVGLIVRRYYVSGETTPSDRNKLIICIVLILGSSIATAVYWGSSDGWIGLVVSNSIWFLSTLALWLGVPQAKKPRVWGVPLVPWVPSLSIAINLFLLGSIDKASFERFGIWTGILLVYYFLIGLHASYDSVMESKTVAGEVNSSL 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3024543 3026729 + CmaCh18G005060.1 Cma18g00506 313844
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00506 584 PIRSF AA_transporter 57 487 - -
Cma18g00506 584 PIRSF AA_transporter 461 581 - -
Cma18g00506 584 Pfam Amino acid permease 78 498 IPR002293 GO:0016020|GO:0022857|GO:0055085
Cma18g00506 584 Pfam C-terminus of AA_permease 516 566 IPR029485 -
Cma18g00506 584 Gene3D Amino acid/polyamine transporter I 72 510 - -
Cma18g00506 584 PANTHER CATIONIC AMINO ACID TRANSPORTER 1 13 575 - -
Cma18g00506 584 PANTHER INNER MEMBRANE TRANSPORTER YGJI-RELATED 13 575 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00497 Cma-Chr13:5311396 Cma18g00506 Cma-Chr18:3024543 0 dispersed
Cma15g00528 Cma-Chr15:2441111 Cma18g00506 Cma-Chr18:3024543 1.24E-134 dispersed
Cma18g00504 Cma-Chr18:2996656 Cma18g00506 Cma-Chr18:3024543 0 dispersed
Cma18g00505 Cma-Chr18:3012162 Cma18g00506 Cma-Chr18:3024543 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00506 K03294 - csv:101212046 1001.5