Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00511 ATGAGTCATTTTTCAGGGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGTGCTCCTGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTGTATGCTTAAAATGTAGTGGTGTACACAGAAACCTTGGAACACATATATCAAAGGTCTTATCAATAACATTGGATGAATGGTCTGATGATGAGATCGATGCCATGATGGAGGTTGGAGGAAATGGTTTTGCTAATTCAATATATGAGGCTTTTATTCCTGATGGATATACAAAGCCTGGACCGAGTGCTAGCCATGAGGAGCGTTCAAAGTTCATAAAGTCCAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTATACCCAATAACTCTTCAAAGACTCCTGAGGAGCCAAGTTGTTTTCAGAACTCTTCAAAGAAATCACCACAGGAAGGCATGGTTGAATTTATGGGACTACTGAAAGTTAAGGTGATTAAAGGCACAAACTTAGCTGTGAGAGATATGAAATCCAGTGATCCTTTCATTACCGTGACTCTTGGGCAACAGACTGCGAAAACAACTGTGAAAAAGAAAAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCAAGAATATGGTCCCTTAGAGTTGAAAGTGTTCGATCTCGACACTGTTTCATCTAATGACTCGATGGGTGAAGCAGAAATCGACCTCCAGCCAATGTTAACATCAGCAATGGCATTTGGAGATGCTGAAATATATGGGGATATGCAGATAGGAAAATGGTTGAAATCAGACGACAACGCCCTTATCGACGACAGTGCTGTCAATATCGTGGATGGGAAGGTGAAACAAGAGGTGTCGCTCAAGCTCGGAAACGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAGTAG 975 40.62 MSHFSGDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFVCLKCSGVHRNLGTHISKVLSITLDEWSDDEIDAMMEVGGNGFANSIYEAFIPDGYTKPGPSASHEERSKFIKSKYELQEFLKPSLRIIPNNSSKTPEEPSCFQNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITVTLGQQTAKTTVKKKNLNPVWNEELMLSVPQEYGPLELKVFDLDTVSSNDSMGEAEIDLQPMLTSAMAFGDAEIYGDMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLGNVESGEVYLELEWMPLDQ 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3056927 3060365 + CmaCh18G005110.1 Cma18g00511 313849
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00511 324 CDD C2_ArfGAP 168 311 - -
Cma18g00511 324 ProSiteProfiles ARF GTPase-activating proteins domain profile. 15 143 IPR001164 GO:0005096
Cma18g00511 324 SUPERFAMILY ArfGap/RecO-like zinc finger 15 132 IPR037278 -
Cma18g00511 324 SMART arf_gap_3 15 137 IPR001164 GO:0005096
Cma18g00511 324 ProSiteProfiles C2 domain profile. 151 267 IPR000008 -
Cma18g00511 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 9 324 IPR044518 GO:0005096|GO:0005543
Cma18g00511 324 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 9 324 - -
Cma18g00511 324 SMART C2_3c 169 264 IPR000008 -
Cma18g00511 324 Pfam C2 domain 168 259 IPR000008 -
Cma18g00511 324 Pfam Putative GTPase activating protein for Arf 16 131 IPR001164 GO:0005096
Cma18g00511 324 Gene3D C2 domain 165 324 IPR035892 -
Cma18g00511 324 CDD ArfGap 18 124 - -
Cma18g00511 324 PRINTS HIV Rev interacting protein signature 27 46 IPR001164 GO:0005096
Cma18g00511 324 PRINTS HIV Rev interacting protein signature 46 63 IPR001164 GO:0005096
Cma18g00511 324 PRINTS HIV Rev interacting protein signature 67 88 IPR001164 GO:0005096
Cma18g00511 324 MobiDBLite consensus disorder prediction 137 158 - -
Cma18g00511 324 Gene3D Arf GTPase activating protein 5 135 IPR038508 -
Cma18g00511 324 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 166 322 IPR035892 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma03g01448 Cma18g00511 CCT
Cma07g00060 Cma18g00511 CCT
Cma13g00493 Cma18g00511 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00511 Cma-Chr18:3056927 Cma18g00867 Cma-Chr18:7545002 3.26E-102 dispersed
Cma13g00493 Cma-Chr13:5283276 Cma18g00511 Cma-Chr18:3056927 0 wgd
Cma18g00511 Cma-Chr18:3056927 Cma03g01448 Cma-Chr3:9065506 4.69E-151 wgd
Cma18g00511 Cma-Chr18:3056927 Cma07g00060 Cma-Chr7:331093 1.02E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00511 K12486 - csv:101211569 553.518