Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00511 | ATGAGTCATTTTTCAGGGGATTTCAGGAGGCCTGAATCAGCTAAAAGTAGATTAAAAGATTTATTGCTTCAAAAAGATAATCAACTTTGTGCAGATTGTGGTGCTCCTGATCCTAAATGGGCCTCTGCAAATATTGGTGTATTTGTATGCTTAAAATGTAGTGGTGTACACAGAAACCTTGGAACACATATATCAAAGGTCTTATCAATAACATTGGATGAATGGTCTGATGATGAGATCGATGCCATGATGGAGGTTGGAGGAAATGGTTTTGCTAATTCAATATATGAGGCTTTTATTCCTGATGGATATACAAAGCCTGGACCGAGTGCTAGCCATGAGGAGCGTTCAAAGTTCATAAAGTCCAAATATGAACTTCAAGAATTTTTAAAACCTAGCTTGCGAATTATACCCAATAACTCTTCAAAGACTCCTGAGGAGCCAAGTTGTTTTCAGAACTCTTCAAAGAAATCACCACAGGAAGGCATGGTTGAATTTATGGGACTACTGAAAGTTAAGGTGATTAAAGGCACAAACTTAGCTGTGAGAGATATGAAATCCAGTGATCCTTTCATTACCGTGACTCTTGGGCAACAGACTGCGAAAACAACTGTGAAAAAGAAAAACTTGAATCCAGTTTGGAACGAGGAACTCATGCTGTCGGTTCCTCAAGAATATGGTCCCTTAGAGTTGAAAGTGTTCGATCTCGACACTGTTTCATCTAATGACTCGATGGGTGAAGCAGAAATCGACCTCCAGCCAATGTTAACATCAGCAATGGCATTTGGAGATGCTGAAATATATGGGGATATGCAGATAGGAAAATGGTTGAAATCAGACGACAACGCCCTTATCGACGACAGTGCTGTCAATATCGTGGATGGGAAGGTGAAACAAGAGGTGTCGCTCAAGCTCGGAAACGTAGAATCAGGTGAAGTGTACTTGGAACTAGAGTGGATGCCTCTTGATCAGTAG | 975 | 40.62 | MSHFSGDFRRPESAKSRLKDLLLQKDNQLCADCGAPDPKWASANIGVFVCLKCSGVHRNLGTHISKVLSITLDEWSDDEIDAMMEVGGNGFANSIYEAFIPDGYTKPGPSASHEERSKFIKSKYELQEFLKPSLRIIPNNSSKTPEEPSCFQNSSKKSPQEGMVEFMGLLKVKVIKGTNLAVRDMKSSDPFITVTLGQQTAKTTVKKKNLNPVWNEELMLSVPQEYGPLELKVFDLDTVSSNDSMGEAEIDLQPMLTSAMAFGDAEIYGDMQIGKWLKSDDNALIDDSAVNIVDGKVKQEVSLKLGNVESGEVYLELEWMPLDQ | 324 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 3056927 | 3060365 | + | CmaCh18G005110.1 | Cma18g00511 | 313849 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00511 | 324 | CDD | C2_ArfGAP | 168 | 311 | - | - | |
Cma18g00511 | 324 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 15 | 143 | IPR001164 | GO:0005096 | |
Cma18g00511 | 324 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 15 | 132 | IPR037278 | - | |
Cma18g00511 | 324 | SMART | arf_gap_3 | 15 | 137 | IPR001164 | GO:0005096 | |
Cma18g00511 | 324 | ProSiteProfiles | C2 domain profile. | 151 | 267 | IPR000008 | - | |
Cma18g00511 | 324 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 9 | 324 | IPR044518 | GO:0005096|GO:0005543 | |
Cma18g00511 | 324 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD10 | 9 | 324 | - | - | |
Cma18g00511 | 324 | SMART | C2_3c | 169 | 264 | IPR000008 | - | |
Cma18g00511 | 324 | Pfam | C2 domain | 168 | 259 | IPR000008 | - | |
Cma18g00511 | 324 | Pfam | Putative GTPase activating protein for Arf | 16 | 131 | IPR001164 | GO:0005096 | |
Cma18g00511 | 324 | Gene3D | C2 domain | 165 | 324 | IPR035892 | - | |
Cma18g00511 | 324 | CDD | ArfGap | 18 | 124 | - | - | |
Cma18g00511 | 324 | PRINTS | HIV Rev interacting protein signature | 27 | 46 | IPR001164 | GO:0005096 | |
Cma18g00511 | 324 | PRINTS | HIV Rev interacting protein signature | 46 | 63 | IPR001164 | GO:0005096 | |
Cma18g00511 | 324 | PRINTS | HIV Rev interacting protein signature | 67 | 88 | IPR001164 | GO:0005096 | |
Cma18g00511 | 324 | MobiDBLite | consensus disorder prediction | 137 | 158 | - | - | |
Cma18g00511 | 324 | Gene3D | Arf GTPase activating protein | 5 | 135 | IPR038508 | - | |
Cma18g00511 | 324 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 166 | 322 | IPR035892 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma03g01448 | Cma18g00511 | CCT | |
Cma07g00060 | Cma18g00511 | CCT | |
Cma13g00493 | Cma18g00511 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma18g00511 | Cma-Chr18:3056927 | Cma18g00867 | Cma-Chr18:7545002 | 3.26E-102 | dispersed | |
Cma13g00493 | Cma-Chr13:5283276 | Cma18g00511 | Cma-Chr18:3056927 | 0 | wgd | |
Cma18g00511 | Cma-Chr18:3056927 | Cma03g01448 | Cma-Chr3:9065506 | 4.69E-151 | wgd | |
Cma18g00511 | Cma-Chr18:3056927 | Cma07g00060 | Cma-Chr7:331093 | 1.02E-172 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00511 | K12486 | - | csv:101211569 | 553.518 |