Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00530 ATGTTCTGCAATTTGTTTGAGATGGACAATGATAACTATCAGCAAGCGGGTGATTTGACCGATGTAATTCGAGCCAGTTCCGCCGCCAACTCAGCTGCCCAATCATCGGAATTCTCTCTCGGCGATCGCCACCTCTTGCCTCACCTTCCTGCCGATGACTCTTCCATGAATTTTGGAGATCCCTTGTTGCTTCCCACCTCTAGTACTCAAGATCCGTTTCTTCATCCCCATTTCTCTTCCTTCAATTTTGATTCTCACGGCGGCGGTTGGGGTTTCACGGCGGCGGAACGGCCATCTACTGTATTTCCAAGAATGTTGCAGATCTCTCCTACCTCCAAAGTTGGTGACGGTGTAATTACTACTCCTCCATGCGACTCTCCGGCCGTGGCGGCGACGAGGAATTCTCCGAGCTCTAACCCGCTTTGCTTAAGGGATAATTCCGACCTGCAGATCTCTCCTCCAAGAAATCCCGCCATTAAAAGAAGGAAGAACCAAGTGAAGAAGGTGGTGTGCATTCCGGCGCCGGCGCCGGCAAACAGCCGATCAAGCAGCGGCGAAGTTGTCCCTTCCGATCTGTGGGCATGGAGGAAGTACGGACAAAAACCCATCAAAGGATCTCCATATCCAAGGGGATATTACAGGTGTAGCAGCTCCAAAGGCTGCTCGGCCCGAAAGCAGGTCGAGCGTAGTCGCACCGACCCCAACATGCTCGTCATCACCTACACCTCGGAGCATAACCACCCATGGCCTACTCAACGTAATGCGCTAGCAGGCTCAACTCGCTCCCACCCTTCTCGAACCTCCACTTCCACTACACGTATAACAAGCCCAAAACACGAGCACAACAATGAAAACCTAGCAACTATGAAAATAAAGGAGGAGGACATGAATGAAGACCAAACTACGGAGAAAGCAGCCACAACAATAACAACAAACCAACATCAGGTCGAGGGGGATCATCAGGAGTTCTTGTACGACTTGATTTTCGACGAATTTTCCGATCAAATGAACGAGCACGATCATCGTCATGCAACGGACACAATGAATGATAACCTCCTCCGGTTCAGTAACCATGGGTTTAGTAAAGGAAATGATGAAGAGCGCAGTAAAGATCCATTTTTGGAGCTCTATGATTGGACAGAGAAGTCAAATGGGAGCTTATTCAAATAA 1170 49.4 MFCNLFEMDNDNYQQAGDLTDVIRASSAANSAAQSSEFSLGDRHLLPHLPADDSSMNFGDPLLLPTSSTQDPFLHPHFSSFNFDSHGGGWGFTAAERPSTVFPRMLQISPTSKVGDGVITTPPCDSPAVAATRNSPSSNPLCLRDNSDLQISPPRNPAIKRRKNQVKKVVCIPAPAPANSRSSSGEVVPSDLWAWRKYGQKPIKGSPYPRGYYRCSSSKGCSARKQVERSRTDPNMLVITYTSEHNHPWPTQRNALAGSTRSHPSRTSTSTTRITSPKHEHNNENLATMKIKEEDMNEDQTTEKAATTITTNQHQVEGDHQEFLYDLIFDEFSDQMNEHDHRHATDTMNDNLLRFSNHGFSKGNDEERSKDPFLELYDWTEKSNGSLFK 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3291663 3293888 + CmaCh18G005300.1 Cma18g00530 313868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00530 389 ProSiteProfiles WRKY domain profile. 184 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g00530 389 MobiDBLite consensus disorder prediction 129 153 - -
Cma18g00530 389 MobiDBLite consensus disorder prediction 246 276 - -
Cma18g00530 389 Pfam WRKY DNA -binding domain 191 248 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g00530 389 SUPERFAMILY WRKY DNA-binding domain 187 250 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g00530 389 SMART WRKY_cls 189 249 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cma18g00530 389 MobiDBLite consensus disorder prediction 129 156 - -
Cma18g00530 389 Gene3D WRKY domain 162 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cma18g00530 389 MobiDBLite consensus disorder prediction 246 279 - -
Cma18g00530 389 PANTHER WRKY TRANSCRIPTION FACTOR 14-RELATED 95 382 - -
Cma18g00530 389 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 95 382 IPR044810 GO:0003700
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00585 Cma-Chr13:5832711 Cma18g00530 Cma-Chr18:3291663 1.67E-34 dispersed
Cma14g02067 Cma-Chr14:14362158 Cma18g00530 Cma-Chr18:3291663 1.87E-44 dispersed
Cma15g01067 Cma-Chr15:6759134 Cma18g00530 Cma-Chr18:3291663 9.46E-17 dispersed
Cma16g00580 Cma-Chr16:2998775 Cma18g00530 Cma-Chr18:3291663 3.45E-38 dispersed
Cma18g00429 Cma-Chr18:2364208 Cma18g00530 Cma-Chr18:3291663 2.21E-21 dispersed
Cma18g00530 Cma-Chr18:3291663 Cma03g01465 Cma-Chr3:9131488 1.06E-58 wgd
Cma18g00530 Cma-Chr18:3291663 Cma07g00047 Cma-Chr7:284916 2.20E-77 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36775 PF03106 WRKY 2.00E-25 CL0274 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00530 - - bhj:120083610 521.931