Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00533 ATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGATGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCTCCGCCTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGACATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGGTCTGATAAAAAATTTGGATTCAATTCTGGACCAGACTTCACACTCAAGGAATTCCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGATTTAAATTTTGATATCAAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAGTACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACGTTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAACGTGGCACCGGTGGACTGGTTGATTCATGGGCAAAATGCTATCGAACTTTATAGTGCACAACGACATAGGACATCGCTTTCACATGATAAATTGTTAATTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGAACACCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAGAGAGAGTGTTATGCCTGCTTCTACGACTTATATCTCTCTTCAACTTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGTTCATGTCCAGTAGACGACAGGTGCGTGCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCGAGATACTGTGAAATGGGAAACGACAATGGAACTGTAGCTAAGGTAATTGGAAATTCATCTTGGTCTCCAGAAATAATAGCTTTAATGCATTGTAAATGA 1776 42.29 MLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPPSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGTSVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAQEDLNFDIKSSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLIGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMGNDNGTVAKVIGNSSWSPEIIALMHCK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3366963 3372729 - CmaCh18G005330.1 Cma18g00533 313871

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00533 591 Pfam jmjN domain 28 61 IPR003349 -
Cma18g00533 591 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 575 - -
Cma18g00533 591 Pfam C5HC2 zinc finger 491 542 IPR004198 -
Cma18g00533 591 SMART cupin_9 235 401 IPR003347 -
Cma18g00533 591 Pfam JmjC domain, hydroxylase 268 384 IPR003347 -
Cma18g00533 591 MobiDBLite consensus disorder prediction 99 115 - -
Cma18g00533 591 ProSiteProfiles JmjC domain profile. 235 401 IPR003347 -
Cma18g00533 591 SMART JmjN_1 26 67 IPR003349 -
Cma18g00533 591 MobiDBLite consensus disorder prediction 93 136 - -
Cma18g00533 591 Gene3D Cupin 12 385 - -
Cma18g00533 591 ProSiteProfiles JmjN domain profile. 27 68 IPR003349 -
Cma18g00533 591 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 3 575 - -
Cma18g00533 591 MobiDBLite consensus disorder prediction 116 136 - -
Cma18g00533 591 SUPERFAMILY Clavaminate synthase-like 206 428 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00533 - - - cmax:111489928 1223.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00273 Cma-Chr8:1591842 Cma18g00533 Cma-Chr18:3366963 1.09E-158 dispersed
Cma15g01224 Cma-Chr15:7738040 Cma18g00533 Cma-Chr18:3366963 4.50E-12 dispersed
Cma18g00533 Cma-Chr18:3366963 Cma19g00217 Cma-Chr19:1475158 6.79E-61 dispersed
Cma13g00454 Cma-Chr13:5045463 Cma18g00533 Cma-Chr18:3366963 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g00760 . 43 1246 JUMONJI Transcription Factor Family AT1G08620 52.8 0.0e+00 1212.6
Cma12g00959 . 1 1122 JUMONJI Transcription Factor Family AT1G08620 53.9 0.0e+00 1160.2
Cma18g00533 . 9 558 JUMONJI Transcription Factor Family AT1G08620 59.9 3.1e-188 656.8
Cma18g00533 . 4 560 JUMONJI Transcription Factor Family AT1G30810 63.8 6.8e-203 704.9
Cma18g00533 . 4 573 JUMONJI Transcription Factor Family AT2G34880 55.0 1.5e-178 624.0
Cma18g00533 . 35 560 JUMONJI Transcription Factor Family AT4G20400 61.7 4.4e-195 679.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003199 1 6 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 5 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36776 PF02373 JmjC 1.40E-43 CL0029 Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00533 Cma_Chr18 FPKM 1.815972 2.106291 2.571272 3.062196 3.383762 2.846669 3.571887 3.088504 3.433188 3.235507