Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00533 ATGTTAGGGAGTCCTCAGCATCTGAAGATATCAGCTAGATGGGACCCGCATGAAGCGTGCAGGCCTTTAATTGATGAAGCACCTGTATTTTATCCAACCGTTGAGGAATTTGAAGATACACTTGGGTACATAGCTAAGATTCGTCTTCAAGCAGAAGCTTATGGTATATGCCGGATTGTCCCTCCGCCTTCTTGGAATCCACCATGCGTTCTCAAGGAGAAATGCATATGGGAAAATGACAAATTTTCTACTCGTATTCAGCAACTTGATTTGCTACAAAATAGGGAGCCCATGAAAAAGAAGAGTAGAGGTAGAAAACGCAAGCGAAGGAAGCAGTCAAGAGCAGGGACATCAGTTAGAAACACCAATCTTGGTGTAGAAGCAAACCCTTCTTCTGGGTCTGATAAAAAATTTGGATTCAATTCTGGACCAGACTTCACACTCAAGGAATTCCAGGCATATGCAGACTACTTTAAGGAATGTTATTTTGGAATTAAGCAGGCTCAAGAGGATTTAAATTTTGATATCAAATCTAGCCAGAGAAGGGAGCCTTCTGTGGAGGATATTGAGGGTGAGTACTGGCGGATAGTTGAAAAGTCTACAGATGAGGTCGAGGTTTACTATGGAGCTGATATAGAATCAGGAACGTTCGCCAGTGGCTTTCCCAAGGCCTCATCGATGGTAACTGAAGGAATTTCAGATCCATATGTAAAGTCTGGTTGGAATCTGAATAACTTCCCTCGCTTGCCAGGTTCTGTTCTGTGTTTTGAGGAAAGTGATATATCTGGAGTTCTAGTTCCATGGCTGTATGTCGGAATGTTCTTTTCATCATTTTGTTGGCATGTTGAAGACCACCATCTTTACTCTTTAAACTATATGCACTGGGGCGATCCAAAAGTATGGTATGGAGTTCCTGGAAGCTACGCACCTTCTTTAGAAGCTGCAATGAAAAAACATTTGCCTGACTTATTTGAAGAACACCCAGATTTACTTCATGACTTGGTCACTCAATTATCTCCTTCAATACTCAAATCTGAAGGAGTACCTGTGTATCGAGTGGTCCAAAATTCCAGGGAGTTTGTTCTTACGTTTCCAAGGGCATATCACGCAGGATTTAATTGTGGTTTCAACTGTGCTGAGGCTGTGAACGTGGCACCGGTGGACTGGTTGATTCATGGGCAAAATGCTATCGAACTTTATAGTGCACAACGACATAGGACATCGCTTTCACATGATAAATTGTTAATTGGATCAGCTCGGGAAGCTGCCCAGGCCCTTTGGGAGCTATTAGTTCTTGAAAAGAGAACACCAAGTAATCAGAGTTGGATAAGTGTGTGTGGAAAAGATGGAGATCTTACAAAAGTGATCAAGACAAGGGTGAAGATGGAGGAGGAAAGAATGAATTGCCTTCCAACTCTTATGAAGGTGCAAAAGATGGAAAACGAGATTGATTGCAAAAGCGAGAGAGAGTGTTATGCCTGCTTCTACGACTTATATCTCTCTTCAACTTCGTGCAAGTGTTCCCCCGATCGATTCTCATGCCTTAAGCATGCTAGTAACTTTTGTTCATGTCCAGTAGACGACAGGTGCGTGCTCTTTCGCTACAGTATAAACGAGCTGCACACACTTGTTGGAGCATTAGAAGGGGGATTAGATGCCATTAAAGAATGGGCCTCGAGATACTGTGAAATGGGAAACGACAATGGAACTGTAGCTAAGGTAATTGGAAATTCATCTTGGTCTCCAGAAATAATAGCTTTAATGCATTGTAAATGA 1776 42.29 MLGSPQHLKISARWDPHEACRPLIDEAPVFYPTVEEFEDTLGYIAKIRLQAEAYGICRIVPPPSWNPPCVLKEKCIWENDKFSTRIQQLDLLQNREPMKKKSRGRKRKRRKQSRAGTSVRNTNLGVEANPSSGSDKKFGFNSGPDFTLKEFQAYADYFKECYFGIKQAQEDLNFDIKSSQRREPSVEDIEGEYWRIVEKSTDEVEVYYGADIESGTFASGFPKASSMVTEGISDPYVKSGWNLNNFPRLPGSVLCFEESDISGVLVPWLYVGMFFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGSYAPSLEAAMKKHLPDLFEEHPDLLHDLVTQLSPSILKSEGVPVYRVVQNSREFVLTFPRAYHAGFNCGFNCAEAVNVAPVDWLIHGQNAIELYSAQRHRTSLSHDKLLIGSAREAAQALWELLVLEKRTPSNQSWISVCGKDGDLTKVIKTRVKMEEERMNCLPTLMKVQKMENEIDCKSERECYACFYDLYLSSTSCKCSPDRFSCLKHASNFCSCPVDDRCVLFRYSINELHTLVGALEGGLDAIKEWASRYCEMGNDNGTVAKVIGNSSWSPEIIALMHCK 591
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3366963 3372729 - CmaCh18G005330.1 Cma18g00533 313871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00533 591 Pfam jmjN domain 28 61 IPR003349 -
Cma18g00533 591 PANTHER LYSINE-SPECIFIC DEMETHYLASE 3 575 - -
Cma18g00533 591 Pfam C5HC2 zinc finger 491 542 IPR004198 -
Cma18g00533 591 SMART cupin_9 235 401 IPR003347 -
Cma18g00533 591 Pfam JmjC domain, hydroxylase 268 384 IPR003347 -
Cma18g00533 591 MobiDBLite consensus disorder prediction 99 115 - -
Cma18g00533 591 ProSiteProfiles JmjC domain profile. 235 401 IPR003347 -
Cma18g00533 591 SMART JmjN_1 26 67 IPR003349 -
Cma18g00533 591 MobiDBLite consensus disorder prediction 93 136 - -
Cma18g00533 591 Gene3D Cupin 12 385 - -
Cma18g00533 591 ProSiteProfiles JmjN domain profile. 27 68 IPR003349 -
Cma18g00533 591 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ14-RELATED 3 575 - -
Cma18g00533 591 MobiDBLite consensus disorder prediction 116 136 - -
Cma18g00533 591 SUPERFAMILY Clavaminate synthase-like 206 428 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00273 Cma-Chr8:1591842 Cma18g00533 Cma-Chr18:3366963 1.09E-158 dispersed
Cma15g01224 Cma-Chr15:7738040 Cma18g00533 Cma-Chr18:3366963 4.50E-12 dispersed
Cma18g00533 Cma-Chr18:3366963 Cma19g00217 Cma-Chr19:1475158 6.79E-61 dispersed
Cma13g00454 Cma-Chr13:5045463 Cma18g00533 Cma-Chr18:3366963 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36776 PF02373 JmjC 1.40E-43 CL0029 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00533 - - cmax:111489928 1223.76