Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00546 ATGGCATCCACTTCACTTTTCAAGTTCTTCTCCATCTTCTTCTTTCTCTTTTGTCTTCTCACAACCCAAGCTGTTTCACAATCTAATGAATGTGAAACAACAACAAATGAATGCACCAATAAAGAAAAGGCATTACGACTCAAAATCATCGCCATTTTCTCAGTCCTCATTGCAAGTGTGATCGGCGTTTGTTTACCACTCTTCACTCGATCTATCCCGTCGTTGCACCCTGATAGAAACATGTTCATCATCCTCAAAGCCTTCGCGGCTGGCATCATTCTCGCCACCGGTTTCATGCATGTTTTACCTGATTCTTTCGACATGCTTTGGTCGAATTGTTTGAAAGAGAATCCATGGCATAAGTTTCCCTTCTCGGGTTTCGTTGCCATGATGTCGGCGATCCTTACGCTCATGGTCGATTCCATGGCTACGAGTTTGTATACCAAGAAACATTCCGAGGTTATGCCTGAAAATTCTCAAGGAGGAGATCAAGAGTTACCTATAGTTATTACTAGTGACAGCAAAGAAATTAGTTTTGGTTCTCAACTATTACGTTACCGAGTGATTGCCATGGTTTTGGAATTGGGAATCGTGGTTCACTCGGTTGTGATTGGTCTATCACTTGGAGCCACAAACGACACATGCACAATCAAGGGCCTAGTGGCTGCGCTTTGTTTCCATCAAATGTTTGAAGGGATGGGTCTTGGTGGATGCATTCTTCAGGCAGAATATAAATGGATGAAGAGGGCAATAATGGCATTTTTCTTCTCGGTGACAACCCCATTTGGGATAGCCCTAGGAATAGGGTTGTCAAAGACATACAAAGAGAACAGCCCTAGTGCCTTAATCACTGTGGGGTTACTCAATGCTTCTTCAGCTGGCCTCCTCATCTACATGGCTTTAGTGGATCTTCTTTCAGCTGACTTTATGGGCCCAAAGTTGCAGGGCAGCATCAAACTTCAAGTCAAATCCTATATTGCCGTTCTCTTAGGAGCTGGTGGTATGTCTTTAATGGCGAAGTGGGCTTGA 1029 43.73 MASTSLFKFFSIFFFLFCLLTTQAVSQSNECETTTNECTNKEKALRLKIIAIFSVLIASVIGVCLPLFTRSIPSLHPDRNMFIILKAFAAGIILATGFMHVLPDSFDMLWSNCLKENPWHKFPFSGFVAMMSAILTLMVDSMATSLYTKKHSEVMPENSQGGDQELPIVITSDSKEISFGSQLLRYRVIAMVLELGIVVHSVVIGLSLGATNDTCTIKGLVAALCFHQMFEGMGLGGCILQAEYKWMKRAIMAFFFSVTTPFGIALGIGLSKTYKENSPSALITVGLLNASSAGLLIYMALVDLLSADFMGPKLQGSIKLQVKSYIAVLLGAGGMSLMAKWA 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3514491 3517015 - CmaCh18G005460.1 Cma18g00546 313884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00546 342 PANTHER ZINC/IRON TRANSPORTER 13 342 - -
Cma18g00546 342 PANTHER ZINC TRANSPORTER 10-RELATED 13 342 - -
Cma18g00546 342 Pfam ZIP Zinc transporter 46 175 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma18g00546 342 Pfam ZIP Zinc transporter 179 339 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cma18g00546 342 TIGRFAM zip: ZIP zinc/iron transport family 34 342 IPR004698 GO:0005385|GO:0016021|GO:0071577
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g01981 Cma-Chr11:12966451 Cma18g00546 Cma-Chr18:3514491 1.47E-111 dispersed
Cma12g00640 Cma-Chr12:3405585 Cma18g00546 Cma-Chr18:3514491 1.52E-64 dispersed
Cma18g00546 Cma-Chr18:3514491 Cma19g01119 Cma-Chr19:9194576 2.84E-56 dispersed
Cma02g00735 Cma-Chr2:4458402 Cma18g00546 Cma-Chr18:3514491 3.58E-79 transposed
Cma03g01278 Cma-Chr3:8336845 Cma18g00546 Cma-Chr18:3514491 1.42E-137 transposed
Cma13g00436 Cma-Chr13:4933094 Cma18g00546 Cma-Chr18:3514491 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00546 K14709 - csv:101221552 557.755