Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00548 ATGGCGCAGAAATCTCTGATCTACACTTTTGTCGCTCGCGGAACCGTGATTCTCGCTGAGTACACCGAATACAGTGGGAATTTCAATTCCATTGCTTTTCAATGCCTCCAGAAATTGCCCTCTGCTAATAACAAATTCACCTATAATTGCGATGGCCACACCTTCAATTATCTCGTCGACAACGGTTACACATACTGTGTCGTTGCAACTGAATCAGCTGGAAGACAAGTGCCAATTGCATTTTTGGAGCGTATTAAGGATGATTTCGTGTCAAAGTATGGCGGGGGAAAGGCTGCCACAGCTCCTGCCAATAGTCTTAACAAGGAATTTAGGTCAAAGCTGAAGGAACATATGCAGTACTGTGTTGATAATCCTGAAGAGATTAGCAAGCTTGCAAAGGTGAAAGCTCAGGTTTCAGAAGTGAAAGGTGTTATGATGGAAAATATTGAAAAGGTTCTTGACAGAGGAGAGAAGATAGAACTTCTAGTGGATAAGACCGAAAACCTTCATAACCAGGCACAAGACTTCAAGACGAGTGGAACGAAAATTCGAAGGAAAATGTGGCTACAAAATATGAAGATCAAGTTGATCGTTTTGGGGATTTTGATAGCTTTGATCCTTATCATAGTGCTTTCAGTTTGCCATGGCTTCAACTGTGGTGGAAAATGA 669 41.85 MAQKSLIYTFVARGTVILAEYTEYSGNFNSIAFQCLQKLPSANNKFTYNCDGHTFNYLVDNGYTYCVVATESAGRQVPIAFLERIKDDFVSKYGGGKAATAPANSLNKEFRSKLKEHMQYCVDNPEEISKLAKVKAQVSEVKGVMMENIEKVLDRGEKIELLVDKTENLHNQAQDFKTSGTKIRRKMWLQNMKIKLIVLGILIALILIIVLSVCHGFNCGGK 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3551057 3558806 - CmaCh18G005480.1 Cma18g00548 313886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00548 222 SUPERFAMILY SNARE-like 6 121 IPR011012 -
Cma18g00548 222 ProSitePatterns Synaptobrevin signature. 148 167 IPR001388 GO:0016021|GO:0016192
Cma18g00548 222 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 130 190 IPR042855 -
Cma18g00548 222 CDD Longin 7 121 IPR010908 -
Cma18g00548 222 Gene3D Longin domain 1 127 - -
Cma18g00548 222 SMART Longin_2 31 113 IPR010908 -
Cma18g00548 222 PRINTS Synaptobrevin signature 135 154 IPR001388 GO:0016021|GO:0016192
Cma18g00548 222 PRINTS Synaptobrevin signature 155 174 IPR001388 GO:0016021|GO:0016192
Cma18g00548 222 PRINTS Synaptobrevin signature 191 210 IPR001388 GO:0016021|GO:0016192
Cma18g00548 222 Pfam Synaptobrevin 129 215 IPR042855 -
Cma18g00548 222 ProSiteProfiles Longin domain profile. 10 114 IPR010908 -
Cma18g00548 222 Gene3D - 128 214 - -
Cma18g00548 222 Pfam Regulated-SNARE-like domain 34 111 IPR010908 -
Cma18g00548 222 PANTHER SNARE PROTEINS 1 170 - -
Cma18g00548 222 PANTHER SYNAPTOBREVIN, LONGIN-LIKE DOMAIN PROTEIN-RELATED 1 170 - -
Cma18g00548 222 CDD R-SNARE 130 188 - -
Cma18g00548 222 SUPERFAMILY SNARE fusion complex 124 192 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01883 Cma-Chr14:13323723 Cma18g00548 Cma-Chr18:3551057 1.46E-131 dispersed
Cma17g00111 Cma-Chr17:548927 Cma18g00548 Cma-Chr18:3551057 8.53E-113 dispersed
Cma18g00548 Cma-Chr18:3551057 Cma19g00146 Cma-Chr19:943919 3.32E-127 dispersed
Cma20g00159 Cma-Chr20:781774 Cma18g00548 Cma-Chr18:3551057 7.09E-40 dispersed
Cma13g00434 Cma-Chr13:4887342 Cma18g00548 Cma-Chr18:3551057 2.20E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00548 K08511 - csv:101221779 405.986