Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00549 ATGATGCAAACTGGGCCTCACAAAGTTGCAGAAGAAGATGCCTTTTACAAGGAAAAGGATAAGGTCATAATTTATCCGAGAGGCTTTAATATCACATGGGGCAATGATCATCGTTATTGGCGTATTGTCAACCCCAACGAGTCGGAGAATTTGAGCTTGGCCGAGCTGAAACAAGTTTCATGGCTTGAAGTGACATGCTCAACTGATAATGTAGAGCTTGGAAAGAATTACAAAGTGGGTTTCAATGTTTCACTAAGGCCAGATGCATTTGGATGGAAAGGGCTTGATGTTTATGTAATGGCTAAGGTTGGGAAGTCAGGAAACTTCTTCCCTAAGAAAGTGTCTCTTGGAGACGACCACCCAAATCAAAATTTTATCATTCCTAAGACGCCTTTAGTAATCCCAATTGATCCTTCAACAGCCAAAGAGAACAGGAGCATCCACCTTGGGTTGTATGAAGTTTGGAGTTCAAAGTGGAAGGGGGGATTGCAGATCCACAATGCATTCATTGAGAAGATTGACTAA 525 41.9 MMQTGPHKVAEEDAFYKEKDKVIIYPRGFNITWGNDHRYWRIVNPNESENLSLAELKQVSWLEVTCSTDNVELGKNYKVGFNVSLRPDAFGWKGLDVYVMAKVGKSGNFFPKKVSLGDDHPNQNFIIPKTPLVIPIDPSTAKENRSIHLGLYEVWSSKWKGGLQIHNAFIEKID 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3573853 3575852 + CmaCh18G005490.1 Cma18g00549 313887

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00549 174 PANTHER - 14 170 - -
Cma18g00549 174 Pfam Phloem protein 2 21 170 IPR025886 -
Cma18g00549 174 PANTHER PROTEIN PHLOEM PROTEIN 2-LIKE A9 14 170 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00549 - - - csv:101222726 217.238
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00549 Cma-Chr18:3573853 Cma18g00555 Cma-Chr18:3641298 3.75E-57 dispersed
Cma18g00549 Cma-Chr18:3573853 Cma18g00550 Cma-Chr18:3588444 2.19E-07 tandem
Cma13g00429 Cma-Chr13:4825925 Cma18g00549 Cma-Chr18:3573853 5.28E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g153 . . . . . . . . . Cmo18g00529 . Cma18g00549 . . . Cpe09g00689 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00923 Cam01g0951 Cec01g0954 Cco01g0992 Clacu01g0952 Cmu01g0910 Cre01g0842 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000268 1 5 1 1 1 6 6 6 6 4 6 6 4 4 6 4 6 2 6 6 5 5 5 7 10 5 4 9 8 3 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00549 Cma_Chr18 FPKM 12.515813 13.530075 79.542946 86.687111 43.308304 32.864197 42.047768 10.854027 12.093011 15.318012