Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00549 | ATGATGCAAACTGGGCCTCACAAAGTTGCAGAAGAAGATGCCTTTTACAAGGAAAAGGATAAGGTCATAATTTATCCGAGAGGCTTTAATATCACATGGGGCAATGATCATCGTTATTGGCGTATTGTCAACCCCAACGAGTCGGAGAATTTGAGCTTGGCCGAGCTGAAACAAGTTTCATGGCTTGAAGTGACATGCTCAACTGATAATGTAGAGCTTGGAAAGAATTACAAAGTGGGTTTCAATGTTTCACTAAGGCCAGATGCATTTGGATGGAAAGGGCTTGATGTTTATGTAATGGCTAAGGTTGGGAAGTCAGGAAACTTCTTCCCTAAGAAAGTGTCTCTTGGAGACGACCACCCAAATCAAAATTTTATCATTCCTAAGACGCCTTTAGTAATCCCAATTGATCCTTCAACAGCCAAAGAGAACAGGAGCATCCACCTTGGGTTGTATGAAGTTTGGAGTTCAAAGTGGAAGGGGGGATTGCAGATCCACAATGCATTCATTGAGAAGATTGACTAA | 525 | 41.9 | MMQTGPHKVAEEDAFYKEKDKVIIYPRGFNITWGNDHRYWRIVNPNESENLSLAELKQVSWLEVTCSTDNVELGKNYKVGFNVSLRPDAFGWKGLDVYVMAKVGKSGNFFPKKVSLGDDHPNQNFIIPKTPLVIPIDPSTAKENRSIHLGLYEVWSSKWKGGLQIHNAFIEKID | 174 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 3573853 | 3575852 | + | CmaCh18G005490.1 | Cma18g00549 | 313887 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00549 | 174 | PANTHER | - | 14 | 170 | - | - | |
| Cma18g00549 | 174 | Pfam | Phloem protein 2 | 21 | 170 | IPR025886 | - | |
| Cma18g00549 | 174 | PANTHER | PROTEIN PHLOEM PROTEIN 2-LIKE A9 | 14 | 170 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma18g00549 | Cma-Chr18:3573853 | Cma18g00555 | Cma-Chr18:3641298 | 3.75E-57 | dispersed | |
| Cma18g00549 | Cma-Chr18:3573853 | Cma18g00550 | Cma-Chr18:3588444 | 2.19E-07 | tandem | |
| Cma13g00429 | Cma-Chr13:4825925 | Cma18g00549 | Cma-Chr18:3573853 | 5.28E-08 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00549 | - | - | csv:101222726 | 217.238 |