Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00552 | ATGGAAATAGGGCGTTCCAACCCTCACCATCGGGCTGAATCAAACAACATAAAAATGGAGGGGAAGAATAAGTTCAAAATATATCCAAGGGGACTAGATATTACGTGGGGCAACGACAATCGTTATTGGATGTTATCAGACATGGAGGCGGAAGACAGTTTTGCAGAACTAAAACAAGTAAATTGGCTAGAAGTAACTGGTTCAACACCGAAAAATCTAAAGATTGGGGCTTGGTTCAAAGTGAGTTTCAATGTGACACTAAGACCCAATGCTTTTGGATGGGATGAGTGTAATGTTTACATAATGGCTAAGATTGGGAAAAAGGGGCATTACAGTTTCAAGAAGCTGAATCTTAATGTTAAACAACCAGAAGGAAGATTTAACATTCCCCATAATGAATTAAAAATTAAAGTTGCCAAGCCCAAAAACGGATCCGAAGAGGATCTCAAGCTCTACTTTGGTATGTATGAAGTTTGGAGCAACAGATGGAAAGGAGGGTTGAGGATCTATCATGCACTAGTTGAGGAGTGCGAGGCACCAAAAGAGAAAAAATTATGA | 558 | 39.61 | MEIGRSNPHHRAESNNIKMEGKNKFKIYPRGLDITWGNDNRYWMLSDMEAEDSFAELKQVNWLEVTGSTPKNLKIGAWFKVSFNVTLRPNAFGWDECNVYIMAKIGKKGHYSFKKLNLNVKQPEGRFNIPHNELKIKVAKPKNGSEEDLKLYFGMYEVWSNRWKGGLRIYHALVEECEAPKEKKL | 185 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 3616451 | 3618808 | + | CmaCh18G005520.1 | Cma18g00552 | 313890 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00552 | 185 | Pfam | Phloem protein 2 | 23 | 169 | IPR025886 | - | |
| Cma18g00552 | 185 | PANTHER | - | 10 | 174 | - | - | |
| Cma18g00552 | 185 | PANTHER | PROTEIN PHLOEM PROTEIN 2-LIKE A9 | 10 | 174 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma18g00552 | Cma-Chr18:3616451 | Cma13g00408 | Cma-Chr13:4645214 | 6.47E-06 | dispersed | |
| Cma18g00552 | Cma-Chr18:3616451 | Cma18g00555 | Cma-Chr18:3641298 | 6.95E-53 | proximal | |
| Cma18g00551 | Cma-Chr18:3592503 | Cma18g00552 | Cma-Chr18:3616451 | 9.99E-07 | tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00552 | - | - | cmos:111456742 | 288.885 |