Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00555 ATGGTTGGATTTGTCTATTCATCACCTCACCACAAAGGAGATCAAAAGGCTATAGAAAAAATTAAGAACAAAAAGACCATAATTTATCCAAAAGGCTTAGACATCACATGGGGCAAGGACGACCGATACTGGCGCTTGCCTAGCCGATACCGAAACACGAAGGACCCAAGCGCAGCTGCGGAGCTGCTGCAAGTGTCGTGGCTCGAGGTGACATGCTCAACCAACAACATCGAGGCTGGAAAAAGCTATAGAGTTGGCTTCAACGTATCGATGGCACCAGCGGCTTTTGGATGGAAAGGGTGTAACGTTTACATTATGGCTAAGATTGGGAAGGCAGGGAAATTTGTGTACAAAAAGATGTCGCTAGAGAACAAATGTTCTGTTCCAAATAAGTTTAGTATGCCAGAGGAGGATCTTATTATCACTGTGAAACCTCCACCGAGTTCACTAGGAGACTATTGTCTGTACTTCGGAATGTACGAGGTTTGGAATGGGAGGTGGAAGGGTGGACTCATGATCCACCATGCATTTGTTGAGAAGGTTAACAACTAG 552 45.11 MVGFVYSSPHHKGDQKAIEKIKNKKTIIYPKGLDITWGKDDRYWRLPSRYRNTKDPSAAAELLQVSWLEVTCSTNNIEAGKSYRVGFNVSMAPAAFGWKGCNVYIMAKIGKAGKFVYKKMSLENKCSVPNKFSMPEEDLIITVKPPPSSLGDYCLYFGMYEVWNGRWKGGLMIHHAFVEKVNN 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3641298 3642066 + CmaCh18G005550.1 Cma18g00555 313893

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00555 183 PANTHER PROTEIN PHLOEM PROTEIN 2-LIKE A9 11 178 - -
Cma18g00555 183 Pfam Phloem protein 2 24 176 IPR025886 -
Cma18g00555 183 PANTHER - 11 178 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00555 - - - cpep:111802632 346.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00429 Cma-Chr13:4825925 Cma18g00555 Cma-Chr18:3641298 2.77E-07 dispersed
Cma18g00549 Cma-Chr18:3573853 Cma18g00555 Cma-Chr18:3641298 3.75E-57 dispersed
Cma18g00550 Cma-Chr18:3588444 Cma18g00555 Cma-Chr18:3641298 1.12E-09 dispersed
Cma18g00551 Cma-Chr18:3592503 Cma18g00555 Cma-Chr18:3641298 7.98E-08 dispersed
Cma18g00552 Cma-Chr18:3616451 Cma18g00555 Cma-Chr18:3641298 6.95E-53 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g155 . . . . . . . . . Cmo18g00531 . Cma18g00555 . . . Cpe09g00684 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla01g00916 Cam01g0946 Cec01g0939 Cco01g0983 Clacu01g0946 Cmu01g0901 Cre01g0838 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000268 1 5 1 1 1 6 6 6 6 4 6 6 4 4 6 4 6 2 6 6 5 5 5 7 10 5 4 9 8 3 148
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00555 Cma_Chr18 FPKM 0.269592 0.940888 8.660505 9.554322 4.800905 4.424623 3.996479 0.22385 0.189706 0.0