Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00555 | ATGGTTGGATTTGTCTATTCATCACCTCACCACAAAGGAGATCAAAAGGCTATAGAAAAAATTAAGAACAAAAAGACCATAATTTATCCAAAAGGCTTAGACATCACATGGGGCAAGGACGACCGATACTGGCGCTTGCCTAGCCGATACCGAAACACGAAGGACCCAAGCGCAGCTGCGGAGCTGCTGCAAGTGTCGTGGCTCGAGGTGACATGCTCAACCAACAACATCGAGGCTGGAAAAAGCTATAGAGTTGGCTTCAACGTATCGATGGCACCAGCGGCTTTTGGATGGAAAGGGTGTAACGTTTACATTATGGCTAAGATTGGGAAGGCAGGGAAATTTGTGTACAAAAAGATGTCGCTAGAGAACAAATGTTCTGTTCCAAATAAGTTTAGTATGCCAGAGGAGGATCTTATTATCACTGTGAAACCTCCACCGAGTTCACTAGGAGACTATTGTCTGTACTTCGGAATGTACGAGGTTTGGAATGGGAGGTGGAAGGGTGGACTCATGATCCACCATGCATTTGTTGAGAAGGTTAACAACTAG | 552 | 45.11 | MVGFVYSSPHHKGDQKAIEKIKNKKTIIYPKGLDITWGKDDRYWRLPSRYRNTKDPSAAAELLQVSWLEVTCSTNNIEAGKSYRVGFNVSMAPAAFGWKGCNVYIMAKIGKAGKFVYKKMSLENKCSVPNKFSMPEEDLIITVKPPPSSLGDYCLYFGMYEVWNGRWKGGLMIHHAFVEKVNN | 183 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 3641298 | 3642066 | + | CmaCh18G005550.1 | Cma18g00555 | 313893 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00555 | 183 | PANTHER | PROTEIN PHLOEM PROTEIN 2-LIKE A9 | 11 | 178 | - | - | |
| Cma18g00555 | 183 | Pfam | Phloem protein 2 | 24 | 176 | IPR025886 | - | |
| Cma18g00555 | 183 | PANTHER | - | 11 | 178 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma13g00429 | Cma-Chr13:4825925 | Cma18g00555 | Cma-Chr18:3641298 | 2.77E-07 | dispersed | |
| Cma18g00549 | Cma-Chr18:3573853 | Cma18g00555 | Cma-Chr18:3641298 | 3.75E-57 | dispersed | |
| Cma18g00550 | Cma-Chr18:3588444 | Cma18g00555 | Cma-Chr18:3641298 | 1.12E-09 | dispersed | |
| Cma18g00551 | Cma-Chr18:3592503 | Cma18g00555 | Cma-Chr18:3641298 | 7.98E-08 | dispersed | |
| Cma18g00552 | Cma-Chr18:3616451 | Cma18g00555 | Cma-Chr18:3641298 | 6.95E-53 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00555 | - | - | cpep:111802632 | 346.28 |