Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00557 ATGGTGAACATACATTTCCAAATCCTTATCCGATCCTCTTTATCCTGCTCGCCGTCGCCGTCGCCGTCGCTGTCTTCTTCTTCTTCTTTCTTCTCCGATTTGGGGTTCGTTGACCAGCTTTCTGCCTGCGAATTGACCTTCTTTGGTTTGATTGGTATGGCTGTGCTCTTGGAGGAGATAGTGAAGTCGGTGGAGTTGTGGTTGAAGCTGATCAAGAAACCCGAGCCGTACGTCGATCCGAATCTCGATCCTGTTCTTTTGGTTCCGGGAGTTGCTGGTTCGATCTTGAACGCGGTTCATGAGGATACGGGAAAAGAGGAGCGAGTTTGGGTCAGGATATTAGGGGCTGATGCTAAATTCCAAACCGACCTCTGGTCTTTTTACGATCCTTCTTCTGGTGAGACTGTATGTTTTGATCCGAAGATCAAAATCAAAGTTCCTGATGAGAGAAACGGATTGTATGCAATTGATACTCTGGACCCTGACATGATCATTGGATGCGATTCTGTTTACTATTTCCATGACATGATTGTTGAAATGACCAAGTGGGGTTTTCAAGAAGGAAAAACACTTTTTGGATTTGGATACGATTTTCGCCAAAGTAACAGGTTGCCAGAAACTTTGGATCTCTTAGCTGCGAAACTGGAGGCTGTATATAATGCTTCAGGAGGGAAAAAGATTAATCTTATTAGTCATTCAATGGGTGGTCTTTTAGTGAAATGCTTCATGAGCCTGCGCAGCGACATTTTTGAGAAGTATGTGCAGAATTGGATTGCAATTGCTGCTCCATTCCAGGGTGCACCTGGATATGTTACATCTACCTTTGTGAGTGGAATGTCATTCGTTAATGGATGGAGAGAGAACTTCTTCATATCAAAGTGGAGCATGCACCAACTGCTTATTGAGTGCCCATCCATTTATGAACTAATGGGCTCTCCGGACTTTGATTGGCAACACATTCCTCTACTTGAAGTCTGGAGAGAGAAACTTGACGCGGATGGAAACGCTCACAAGATGTTGGAATCGTACTCGCTTAAAGGAAGTGTCGAAATACTGACAGAATCTCTTTCGACAAACATGATTCTTCATGATGGGATGGATATTCCCCTGCCATTTAATTTGGAGATTTTGAAATGGGCGAACGAGACGCGGGAAATTCTAAAGAATGCTAAACTACCTCCTCATGTCAAGTTTTACAATATATATGCAACAGGTCTCGAGACGCCGCATACCGTTTGCTATGGAGATGCAGAAAATCCTGTTGCTGATTTACAAAAACTGCGATTCATTGAGCCGAAGTATGTTTACGTCGATGGTGATGGGACGGTTCCCGTGGAATCGGCAATGGCCGATGGACTTGATGCAGTAGCGAGGATTGGGGTCCCTGGTGAGCACCAGCGCGTTCTTAGAGACCACCGCTTATTCCGAAGCCTCAAGCATTGGCTCAAAGCAGGCGATCCCGACCCGTTCTACGACCCACTGAACGACTATGTGATCTTGCCAACTGCTTTCGAGGTCGAAAGCCATGTGGACAAGGGTCTGCAAGTAGCTGCTCTAAAAGAGGAATGGGAGATCATCTCCAACGACCAAAATAAACCAGATGAGTTGTGTAATGGGAAGCCATTGGTGAGTTCCATAACGCTATCTCGAGTTGTCGGGGACTGTCCATCCTTGAGGGCTGAGGCTTGCGCAACCGTTATCGTTCATCCCCAGAAAGAGGGTAAGCAGCACGTTGAGCTGAATGCTCTTAGCATATCAGTCGATGCATGA 1770 45.88 MVNIHFQILIRSSLSCSPSPSPSLSSSSSFFSDLGFVDQLSACELTFFGLIGMAVLLEEIVKSVELWLKLIKKPEPYVDPNLDPVLLVPGVAGSILNAVHEDTGKEERVWVRILGADAKFQTDLWSFYDPSSGETVCFDPKIKIKVPDERNGLYAIDTLDPDMIIGCDSVYYFHDMIVEMTKWGFQEGKTLFGFGYDFRQSNRLPETLDLLAAKLEAVYNASGGKKINLISHSMGGLLVKCFMSLRSDIFEKYVQNWIAIAAPFQGAPGYVTSTFVSGMSFVNGWRENFFISKWSMHQLLIECPSIYELMGSPDFDWQHIPLLEVWREKLDADGNAHKMLESYSLKGSVEILTESLSTNMILHDGMDIPLPFNLEILKWANETREILKNAKLPPHVKFYNIYATGLETPHTVCYGDAENPVADLQKLRFIEPKYVYVDGDGTVPVESAMADGLDAVARIGVPGEHQRVLRDHRLFRSLKHWLKAGDPDPFYDPLNDYVILPTAFEVESHVDKGLQVAALKEEWEIISNDQNKPDELCNGKPLVSSITLSRVVGDCPSLRAEACATVIVHPQKEGKQHVELNALSISVDA 589
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3650247 3659619 - CmaCh18G005570.1 Cma18g00557 313895

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00557 589 Pfam Lecithin:cholesterol acyltransferase 137 448 IPR003386 GO:0006629|GO:0008374
Cma18g00557 589 Gene3D alpha/beta hydrolase 132 483 IPR029058 -
Cma18g00557 589 SUPERFAMILY alpha/beta-Hydrolases 80 499 IPR029058 -
Cma18g00557 589 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 15 544 - -
Cma18g00557 589 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-LIKE 4 15 544 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00557 K22389 LCAT3; phospholipase A1 [EC:3.1.1.32] - csv:101219898 1018.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00793 Cma-Chr5:5036488 Cma18g00557 Cma-Chr18:3650247 5.63E-97 dispersed
Cma09g00300 Cma-Chr9:1226398 Cma18g00557 Cma-Chr18:3650247 1.10E-07 dispersed
Cma18g00557 Cma-Chr18:3650247 Cma08g00788 Cma-Chr8:4745716 5.73E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g162 . . . . . . . . . Cmo18g00534 . Cma18g00557 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010940 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00557 Cma_Chr18 FPKM 51.25745 57.939373 52.786568 47.981335 32.991821 34.756039 34.559727 52.663166 51.259487 51.646561