Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00559 ATGCTTTCTGCACTGCCATCGCCTCAAAGAACTCTTCGTCCTCTTCGTCTTTCCGATCACTGTTTTACATCTCTAAGGTTTTTCTGCAAAATGGCACGATCGGCCCTTGATGAAATGTCTACAACTGGCGCTTTTGTAAGAACAGCTTCAACATTTCGCAATTTGATTTCACGAGATCAATCCTCCCAATTTCCAGCAGAATCAGGGAGATATCATCTTTACATTTCATATGCTTGTCCTTGGGCTTCCAGATGCCTTGCATATTTGAAGATCAAAGGACTCGAAAAGGCGATCAGTTTCTCGTCAGTCAAACCAATTTGGGAAAGAACCAAGGACACTGATGATCATAGGGGATGGGTTTTTCCTGGTTCTGATACAGAGGAGCCTGGGGCTGAACCTGACCATTTGAATGGAGCTAAAAGTGTAAGAGATCTGTATGAACTTGCTAGTTCAAATTACACTGGAAAGTACACAGTTCCTGTTCTATGGGACAAGAAACTGAAAACCATTGTTAACAATGAGAGCTCAGAGATAATTCGTATGCTTAATACTGAATTCAATGATATAGCAGAGAATCCAGCTCTAGATCTGTATCCTCCTCACTTGCAAGCCCAAATTGACGAGACTAATGGATGGATATACGACGCCATTAACAACGGTGTCTATAAGTGTGGTTTTGCAAGGATGCAACAGCCCTATGACCAGGCTGTGAAAGAGTTGTATGAAGCTCTGGACAGATGTGAGGACATACTTTCCAAGCAACGTTACCTCTGTGGGAACACACTGTCCGAAGCAGACGTTCGGCTGTTTGTCACCATCATAAGATTTGACGAGGTTTATGCAGTTCACTTCAAATGTAATAAGAAACTGCTACGAGAGTATCCAAATCTGTTCAATTACACCAAGGATATATACCAAACTAAAGGGGTAAGCAGCTCTGTTCATATGGAACACATAAAGAAGCATTATTATGGAAGCCATCCTCAAATCAATCCATTTGGCATCATTCCTCTTGGCCCCAATATTGATTATACTTCTCCTCATGATAGGCATAGATTTTCCTCATAG 1068 41.67 MLSALPSPQRTLRPLRLSDHCFTSLRFFCKMARSALDEMSTTGAFVRTASTFRNLISRDQSSQFPAESGRYHLYISYACPWASRCLAYLKIKGLEKAISFSSVKPIWERTKDTDDHRGWVFPGSDTEEPGAEPDHLNGAKSVRDLYELASSNYTGKYTVPVLWDKKLKTIVNNESSEIIRMLNTEFNDIAENPALDLYPPHLQAQIDETNGWIYDAINNGVYKCGFARMQQPYDQAVKELYEALDRCEDILSKQRYLCGNTLSEADVRLFVTIIRFDEVYAVHFKCNKKLLREYPNLFNYTKDIYQTKGVSSSVHMEHIKKHYYGSHPQINPFGIIPLGPNIDYTSPHDRHRFSS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3671672 3674403 - CmaCh18G005590.1 Cma18g00559 313897

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00559 355 Pfam Glutathione S-transferase, N-terminal domain 78 185 IPR004045 -
Cma18g00559 355 SUPERFAMILY Thioredoxin-like 53 188 IPR036249 -
Cma18g00559 355 PANTHER - 20 354 - -
Cma18g00559 355 Gene3D Glutaredoxin 29 205 - -
Cma18g00559 355 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 199 323 IPR010987 -
Cma18g00559 355 SFLD Glutathione Transferase (cytosolic) 35 352 IPR040079 -
Cma18g00559 355 Gene3D - 206 355 - -
Cma18g00559 355 SUPERFAMILY GST C-terminal domain-like 192 329 IPR036282 -
Cma18g00559 355 CDD GST_C_Omega_like 199 340 - -
Cma18g00559 355 PIRSF GST 26 351 IPR016639 GO:0004364
Cma18g00559 355 Pfam Glutathione S-transferase, C-terminal domain 233 301 - -
Cma18g00559 355 SFLD Xi.1 35 352 IPR016639 GO:0004364
Cma18g00559 355 PANTHER GLUTATHIONYL-HYDROQUINONE REDUCTASE 20 354 IPR016639 GO:0004364
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00559 K07393 ECM4, yqjG; glutathionyl-hydroquinone reductase [EC:1.8.5.7] - csv:101218943 617.846
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00559 Cma-Chr18:3671672 Cma19g00114 Cma-Chr19:681203 3.62E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g166 Blo01g00908 . . . . . . . . . . Cma18g00559 . . . Cpe09g00681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007165 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 3 2 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00559 Cma_Chr18 FPKM 24.627266 27.54952 51.227261 52.518188 10.633707 11.401971 12.2535 49.538498 46.827629 52.030155