Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00561 ATGTTTCTGACCAGGACTGAATATGATAGAGGTGTGAATACTTTCTCTCCTGAAGGACGATTGTTCCAGGTTGAGTACGCGATTGAGGCTATTAAGCTTGGTTCGACGGCAATTGGTTTGAAAACGAAGGAGGGTGTTGTGCTTGCGGTTGAAAAACGTATTACATCTCCACTACTGGAACCAAGTAGCGTGGAAAAAATCATGGAAATTGATGAACATTTAGGATGTGCGATGAGTGGATTGATTGCTGATGCTCACACACTTGTTGAGCATGCTCGAGTTGAGACACAGAACCATCGTTTCTCATATGGTGAGCCAATGACTGTGGAGTCTACAACACAAGCTCTTTGTGATCTAGCCCTAAGATTTGGCGAAGGCGATGAGGAGTCCATGTCTCGACCATTTGGTGTAGCTCTTCTTATTGCCGGGCATGATGAGAAGGGGCCCAGCTTATTCTACACTGATCCATCTGGCACTTTCTGGCAATGCAATGCTAAAGCTATCGGTTCAGGTTCTGAAGGTGCAGATAGCTCTCTGCAAGAGCAATACAACAAGGACCTAACTCTTCTAGAAGCTGAAACCATAGCACTTTCCATTCTGAAGCAAGTTATGGAAGAGAAGGTGACTCCGAACAATGTTGATATTGCGAAGGTGGCTCCGACGTACCATCTATACACCCCTGCCGAGGTGGAGGCAGTCATTAGCAGGCTATGA 714 45.94 MFLTRTEYDRGVNTFSPEGRLFQVEYAIEAIKLGSTAIGLKTKEGVVLAVEKRITSPLLEPSSVEKIMEIDEHLGCAMSGLIADAHTLVEHARVETQNHRFSYGEPMTVESTTQALCDLALRFGEGDEESMSRPFGVALLIAGHDEKGPSLFYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKDLTLLEAETIALSILKQVMEEKVTPNNVDIAKVAPTYHLYTPAEVEAVISRL 237
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3697417 3702573 - CmaCh18G005610.1 Cma18g00561 313899

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00561 237 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 237 IPR029055 -
Cma18g00561 237 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 1 237 - -
Cma18g00561 237 Pfam Proteasome subunit A N-terminal signature 8 30 IPR000426 GO:0006511|GO:0019773
Cma18g00561 237 ProSitePatterns Proteasome alpha-type subunits signature. 8 30 IPR000426 GO:0006511|GO:0019773
Cma18g00561 237 SMART Proteasome_A_N_2 8 30 IPR000426 GO:0006511|GO:0019773
Cma18g00561 237 CDD proteasome_alpha_type_5 8 218 IPR033812 GO:0019773|GO:0043161
Cma18g00561 237 ProSiteProfiles Proteasome alpha-type subunit profile. 23 234 IPR023332 -
Cma18g00561 237 Pfam Proteasome subunit 31 218 IPR001353 GO:0005839|GO:0051603
Cma18g00561 237 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 7 234 IPR029055 -
Cma18g00561 237 PANTHER PROTEASOME SUBUNIT ALPHA TYPE 1 237 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00561 K02729 PSMA5; 20S proteasome subunit alpha 5 [EC:3.4.25.1] - csv:101218476 462.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00400 Cma-Chr3:4429073 Cma18g00561 Cma-Chr18:3697417 1.76E-54 dispersed
Cma18g00561 Cma-Chr18:3697417 Cma18g00562 Cma-Chr18:3706139 5.93E-45 tandem
Cma13g00427 Cma-Chr13:4801404 Cma18g00561 Cma-Chr18:3697417 8.29E-162 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g171 Blo01g00909 . . . . . . . . Cmo18g00539 . Cma18g00561 . . . Cpe09g00678 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005108 1 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 5 3 1 41
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00561 Cma_Chr18 FPKM 47.359749 45.302303 39.355965 38.563107 39.207756 42.151947 36.867374 29.135004 31.286268 32.357185