Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00568 ATGGCTTTCTGGGTGTTTTTCTTCTTGATCTTTGGTTCTGTTCCGCTTGTTCCTGCTCTTACTCTTGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCACAGCTGACTGGCTGGATTGGTAGTGGCGGTGATCCATGTGTTGAGTTATGGAAAGGGGTGACATGTGAAGGCTCTGCTGTTGTCTCCATTGAGATTCCTGGGTTGGGGCTGAATGGCACGATGGGCTATGCGCTCTCGAGCCTTATTTCATTGAGAAATCTTGATATGAGCGACAACAATATTCACGACACGATTCCTTACCAATTACCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAAATTAACTGGTAATCTTCCTTATTCACTTTCCACCATGGCTTCTCTCAATTATCTAAATATGAGCCATAATTTGCTAGCTCAGGCGATAGGAGACGTTTTCACGAATCTTACTTCCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACCGGGGATCTTCCGAATTCGTTGAGCTCATTGTCAAATATTTCTTCGCTCTTTTTACAGAACAATCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTCTAACGACGCTAAATGTAGCGAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGAAATTCATTCGACAACAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCCGGTCGATCTCGTAACAGCCCCCGACGCCCTGGGTCTGGCGGTGGCAACCACACTGCCTCAAGCTCTGATAGCAGTTCATCAAACTCGAAGAAAGGCTTGTCAGTTTTGGAAATAGTAGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTATGCATCCAGAAGAGAAAACGGAAGAACATCGGTCTACGAGCTTCGAGTGGAAGGCTGTCTATTGGCACTAGTGTGAATACGGAGGTGCATGAGCATCGGGTTAAAAGCGTTGCTGCTGTTGCAGATATTAAACCACTCCCTGCGGAGAAAATGAATCCCGAGAGATTACAAGCGAAAAACGGATCGGTGAAAAGGATAAAGTCCCTTACTGCTACTTCTTATACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTTGGTGAAGGCTCTCTCGGTCGTGTTTACAAAGCCGAGTTTCCAAACGGGAAGATAATGGCGATCAAGAAAATCGACAATGCAGCATTATCGCTACAGGAAGAAGACAATTTTCTTGAAGCGGTCTCAAACATGTCAAGATTGAGGCACACGAATATTGTGACACTAAATGGTTATTGCATCGAGCATGGTCAGCGTCTTCTCGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACATGCTCCATTTTGCTGAAGATAGTAGCAAGACACTGACTTGGAACGCACGTGTCCGAGTAGCACTTGGAACAGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACAGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCTGATTCCGGTTTGGCTGCCTTAACGCCCAACACAGAGCGACAGGTTTCTACTCAGATGGTTGGTTCCTTTGGCTACAGTGCTCCGGAATTTGCCTTGTCGGGAATATACACCGTTAAAAGCGACGTGTACAGCTTTGGCGTGGTGATGTTGGAGCTGTTGACGGGACGAAAGCCGCTTGATAGCTCGAGGGTGAGATCGGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCACGATATTGACGCCTTAGCGAAAATGGTCGATCCTACTTTGAATGGAATGTACCCCGCAAAATCTCTATCGCGCTTCGCCGACATCATTGCTTTGTGTGTTCAGCCGGAACCCGAATTTCGACCTCCAATGTCAGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTAAAGAGGCATTCGAGCGACGAGTCGGGTTTCAGTTACAAAACGCCCGACCACGATGCAGTTGAGTTGCAATTTTGA 2121 45.17 MAFWVFFFLIFGSVPLVPALTLASDVQALQVIYTSLNSPPQLTGWIGSGGDPCVELWKGVTCEGSAVVSIEIPGLGLNGTMGYALSSLISLRNLDMSDNNIHDTIPYQLPPNLTSLNMAKNKLTGNLPYSLSTMASLNYLNMSHNLLAQAIGDVFTNLTSLGTLDLSFNNFTGDLPNSLSSLSNISSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPRRPGSGGGNHTASSSDSSSSNSKKGLSVLEIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNTEVHEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSLTATSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCIEHGQRLLVYEFIGNGSLHDMLHFAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDSGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELQF 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3822270 3828153 + CmaCh18G005680.1 Cma18g00568 313906
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00568 706 Gene3D Transferase(Phosphotransferase) domain 1 476 699 - -
Cma18g00568 706 MobiDBLite consensus disorder prediction 263 284 - -
Cma18g00568 706 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cma18g00568 706 ProSiteProfiles Protein kinase domain profile. 398 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00568 706 SUPERFAMILY L domain-like 22 228 - -
Cma18g00568 706 MobiDBLite consensus disorder prediction 240 259 - -
Cma18g00568 706 Pfam Protein tyrosine and serine/threonine kinase 403 672 IPR001245 GO:0004672|GO:0006468
Cma18g00568 706 Gene3D Phosphorylase Kinase; domain 1 360 475 - -
Cma18g00568 706 Gene3D Ribonuclease Inhibitor 20 250 IPR032675 -
Cma18g00568 706 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 19 701 - -
Cma18g00568 706 SUPERFAMILY Protein kinase-like (PK-like) 378 672 IPR011009 -
Cma18g00568 706 PANTHER OS01G0253100 PROTEIN 19 701 IPR045271 GO:0004714|GO:0006468
Cma18g00568 706 MobiDBLite consensus disorder prediction 237 284 - -
Cma18g00568 706 CDD STKc_IRAK 404 675 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00837 Cma-Chr8:5074451 Cma18g00568 Cma-Chr18:3822270 0 dispersed
Cma14g00431 Cma-Chr14:2014953 Cma18g00568 Cma-Chr18:3822270 1.76E-174 dispersed
Cma14g00432 Cma-Chr14:2021563 Cma18g00568 Cma-Chr18:3822270 5.91E-142 dispersed
Cma17g00644 Cma-Chr17:5444729 Cma18g00568 Cma-Chr18:3822270 0 dispersed
Cma19g00972 Cma-Chr19:8515254 Cma18g00568 Cma-Chr18:3822270 1.27E-165 dispersed
Cma13g00416 Cma-Chr13:4703820 Cma18g00568 Cma-Chr18:3822270 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69294 PF07714 PK_Tyr_Ser-Thr 7.50E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00568 - - mcha:111012621 1199.11