Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00568 ATGGCTTTCTGGGTGTTTTTCTTCTTGATCTTTGGTTCTGTTCCGCTTGTTCCTGCTCTTACTCTTGCTTCTGATGTTCAAGCTTTGCAAGTTATATACACCTCATTGAACAGTCCTCCACAGCTGACTGGCTGGATTGGTAGTGGCGGTGATCCATGTGTTGAGTTATGGAAAGGGGTGACATGTGAAGGCTCTGCTGTTGTCTCCATTGAGATTCCTGGGTTGGGGCTGAATGGCACGATGGGCTATGCGCTCTCGAGCCTTATTTCATTGAGAAATCTTGATATGAGCGACAACAATATTCACGACACGATTCCTTACCAATTACCGCCGAACCTCACGAGCCTAAATATGGCAAAAAACAAATTAACTGGTAATCTTCCTTATTCACTTTCCACCATGGCTTCTCTCAATTATCTAAATATGAGCCATAATTTGCTAGCTCAGGCGATAGGAGACGTTTTCACGAATCTTACTTCCCTGGGGACCTTGGACCTTTCTTTCAACAACTTTACCGGGGATCTTCCGAATTCGTTGAGCTCATTGTCAAATATTTCTTCGCTCTTTTTACAGAACAATCAATTGACTGGTTCTCTCAATAATCTTATCAGTTTGCCTCTAACGACGCTAAATGTAGCGAATAATAATTTCAGTGGATGGATACCTCAAGAACTGAAGTCGATCGAAAATTTCATATACGATGGAAATTCATTCGACAACAGTCCTGCACCTCCTCCACCACCTTTTACTCCACCTCCTCCCGGTCGATCTCGTAACAGCCCCCGACGCCCTGGGTCTGGCGGTGGCAACCACACTGCCTCAAGCTCTGATAGCAGTTCATCAAACTCGAAGAAAGGCTTGTCAGTTTTGGAAATAGTAGGGATAATTTTGGGTGCTATAATTTTTGTCCTCATTGTGTTAGTTGCTTTTGCTGTATGCATCCAGAAGAGAAAACGGAAGAACATCGGTCTACGAGCTTCGAGTGGAAGGCTGTCTATTGGCACTAGTGTGAATACGGAGGTGCATGAGCATCGGGTTAAAAGCGTTGCTGCTGTTGCAGATATTAAACCACTCCCTGCGGAGAAAATGAATCCCGAGAGATTACAAGCGAAAAACGGATCGGTGAAAAGGATAAAGTCCCTTACTGCTACTTCTTATACTGTTGCTTCTCTTCAAAGTGCAACAAATAGCTTTAGTCAAGAATGCATAGTTGGTGAAGGCTCTCTCGGTCGTGTTTACAAAGCCGAGTTTCCAAACGGGAAGATAATGGCGATCAAGAAAATCGACAATGCAGCATTATCGCTACAGGAAGAAGACAATTTTCTTGAAGCGGTCTCAAACATGTCAAGATTGAGGCACACGAATATTGTGACACTAAATGGTTATTGCATCGAGCATGGTCAGCGTCTTCTCGTTTACGAGTTCATTGGAAATGGAAGTTTACACGACATGCTCCATTTTGCTGAAGATAGTAGCAAGACACTGACTTGGAACGCACGTGTCCGAGTAGCACTTGGAACAGCTAGAGCTTTAGAATACTTGCATGAGGTATGCTTGCCTTCTGTTGTACATAGAAACTTGAAGACAGCAAACATATTACTTGATGAAGAGCTCAACCCCCATTTGTCTGATTCCGGTTTGGCTGCCTTAACGCCCAACACAGAGCGACAGGTTTCTACTCAGATGGTTGGTTCCTTTGGCTACAGTGCTCCGGAATTTGCCTTGTCGGGAATATACACCGTTAAAAGCGACGTGTACAGCTTTGGCGTGGTGATGTTGGAGCTGTTGACGGGACGAAAGCCGCTTGATAGCTCGAGGGTGAGATCGGAGCAGTCACTTGTGAGATGGGCTACTCCCCAACTTCACGATATTGACGCCTTAGCGAAAATGGTCGATCCTACTTTGAATGGAATGTACCCCGCAAAATCTCTATCGCGCTTCGCCGACATCATTGCTTTGTGTGTTCAGCCGGAACCCGAATTTCGACCTCCAATGTCAGAAGTAGTACAAGCATTGGTGCGTTTAGTGCAAAGAGCCAGTGTGGTAAAGAGGCATTCGAGCGACGAGTCGGGTTTCAGTTACAAAACGCCCGACCACGATGCAGTTGAGTTGCAATTTTGA 2121 45.17 MAFWVFFFLIFGSVPLVPALTLASDVQALQVIYTSLNSPPQLTGWIGSGGDPCVELWKGVTCEGSAVVSIEIPGLGLNGTMGYALSSLISLRNLDMSDNNIHDTIPYQLPPNLTSLNMAKNKLTGNLPYSLSTMASLNYLNMSHNLLAQAIGDVFTNLTSLGTLDLSFNNFTGDLPNSLSSLSNISSLFLQNNQLTGSLNNLISLPLTTLNVANNNFSGWIPQELKSIENFIYDGNSFDNSPAPPPPPFTPPPPGRSRNSPRRPGSGGGNHTASSSDSSSSNSKKGLSVLEIVGIILGAIIFVLIVLVAFAVCIQKRKRKNIGLRASSGRLSIGTSVNTEVHEHRVKSVAAVADIKPLPAEKMNPERLQAKNGSVKRIKSLTATSYTVASLQSATNSFSQECIVGEGSLGRVYKAEFPNGKIMAIKKIDNAALSLQEEDNFLEAVSNMSRLRHTNIVTLNGYCIEHGQRLLVYEFIGNGSLHDMLHFAEDSSKTLTWNARVRVALGTARALEYLHEVCLPSVVHRNLKTANILLDEELNPHLSDSGLAALTPNTERQVSTQMVGSFGYSAPEFALSGIYTVKSDVYSFGVVMLELLTGRKPLDSSRVRSEQSLVRWATPQLHDIDALAKMVDPTLNGMYPAKSLSRFADIIALCVQPEPEFRPPMSEVVQALVRLVQRASVVKRHSSDESGFSYKTPDHDAVELQF 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 3822270 3828153 + CmaCh18G005680.1 Cma18g00568 313906

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00568 706 Gene3D Transferase(Phosphotransferase) domain 1 476 699 - -
Cma18g00568 706 MobiDBLite consensus disorder prediction 263 284 - -
Cma18g00568 706 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Cma18g00568 706 ProSiteProfiles Protein kinase domain profile. 398 675 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00568 706 SUPERFAMILY L domain-like 22 228 - -
Cma18g00568 706 MobiDBLite consensus disorder prediction 240 259 - -
Cma18g00568 706 Pfam Protein tyrosine and serine/threonine kinase 403 672 IPR001245 GO:0004672|GO:0006468
Cma18g00568 706 Gene3D Phosphorylase Kinase; domain 1 360 475 - -
Cma18g00568 706 Gene3D Ribonuclease Inhibitor 20 250 IPR032675 -
Cma18g00568 706 PANTHER PROTEIN STRUBBELIG-RECEPTOR FAMILY 8 19 701 - -
Cma18g00568 706 SUPERFAMILY Protein kinase-like (PK-like) 378 672 IPR011009 -
Cma18g00568 706 PANTHER OS01G0253100 PROTEIN 19 701 IPR045271 GO:0004714|GO:0006468
Cma18g00568 706 MobiDBLite consensus disorder prediction 237 284 - -
Cma18g00568 706 CDD STKc_IRAK 404 675 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00568 - - - mcha:111012621 1199.11
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00837 Cma-Chr8:5074451 Cma18g00568 Cma-Chr18:3822270 0 dispersed
Cma14g00431 Cma-Chr14:2014953 Cma18g00568 Cma-Chr18:3822270 1.76E-174 dispersed
Cma14g00432 Cma-Chr14:2021563 Cma18g00568 Cma-Chr18:3822270 5.91E-142 dispersed
Cma17g00644 Cma-Chr17:5444729 Cma18g00568 Cma-Chr18:3822270 0 dispersed
Cma19g00972 Cma-Chr19:8515254 Cma18g00568 Cma-Chr18:3822270 1.27E-165 dispersed
Cma13g00416 Cma-Chr13:4703820 Cma18g00568 Cma-Chr18:3822270 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma18g00568 . 383 676 Strubbelig Receptor Gene Family AT1G11130 54.1 7.4e-86 315.8
Cma13g00416 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.1 4.8e-85 313.2
Cma17g00644 CCT,CST 375 685 Strubbelig Receptor Gene Family AT1G11130 50.8 2.0e-83 307.8
Cma08g00837 CCT,CST 429 717 Strubbelig Receptor Gene Family AT1G11130 52.9 4.5e-83 306.6
Cma14g00431 . 34 743 Strubbelig Receptor Gene Family AT5G06820 53.0 1.0e-178 624.4
Cma19g00972 CST 34 762 Strubbelig Receptor Gene Family AT4G03390 61.2 6.8e-205 711.4
Cma11g01861 CST 103 821 Strubbelig Receptor Gene Family AT4G03390 60.3 5.8e-188 655.2
Cma03g00479 . 29 771 Strubbelig Receptor Gene Family AT4G03390 52.3 1.3e-155 547.7
Cma17g00644 CCT,CST 384 687 Strubbelig Receptor Gene Family AT4G03390 56.5 6.6e-91 332.8
Cma08g00837 CCT,CST 425 719 Strubbelig Receptor Gene Family AT4G03390 57.8 1.2e-89 328.6
Cma04g00965 . 5 673 Strubbelig Receptor Gene Family AT3G13065 52.8 8.1e-141 498.4
Cma08g00837 CCT,CST 37 717 Strubbelig Receptor Gene Family AT3G13065 50.6 4.6e-104 376.3
Cma17g00644 CCT,CST 7 685 Strubbelig Receptor Gene Family AT3G13065 50.3 9.0e-100 362.1
Cma04g00965 . 10 695 Strubbelig Receptor Gene Family AT1G78980 59.0 2.4e-185 646.4
Cma15g01427 . 10 653 Strubbelig Receptor Gene Family AT1G78980 50.4 2.5e-166 583.2
Cma14g01226 . 23 718 Strubbelig Receptor Gene Family AT1G78980 51.6 1.6e-152 537.3
Cma01g00022 CCT 574 1255 Strubbelig Receptor Gene Family AT1G78980 52.0 3.4e-147 519.6
Cma08g00837 CCT,CST 43 741 Strubbelig Receptor Gene Family AT1G78980 50.4 2.1e-128 457.2
Cma14g01226 . 1 718 Strubbelig Receptor Gene Family AT1G53730 60.1 1.2e-211 733.8
Cma01g00022 CCT 526 1249 Strubbelig Receptor Gene Family AT1G53730 60.6 5.0e-210 728.4
Cma08g00837 CCT,CST 31 730 Strubbelig Receptor Gene Family AT1G53730 59.1 1.6e-179 627.1
Cma17g00644 CCT,CST 1 698 Strubbelig Receptor Gene Family AT1G53730 59.7 1.5e-177 620.5
Cma13g00416 . 4 689 Strubbelig Receptor Gene Family AT1G53730 51.6 6.9e-135 478.8
Cma11g01861 CST 518 810 Strubbelig Receptor Gene Family AT1G53730 56.3 2.9e-88 323.9
Cma14g01226 . 11 713 Strubbelig Receptor Gene Family AT3G14350 51.8 1.8e-180 630.2
Cma01g00022 CCT 536 1253 Strubbelig Receptor Gene Family AT3G14350 50.6 7.5e-179 624.8
Cma08g00837 CCT,CST 39 728 Strubbelig Receptor Gene Family AT3G14350 53.5 7.0e-161 565.1
Cma17g00644 CCT,CST 6 702 Strubbelig Receptor Gene Family AT3G14350 53.0 1.4e-156 550.8
Cma11g01861 CST 517 818 Strubbelig Receptor Gene Family AT3G14350 51.6 1.8e-76 284.6
Cma18g00568 . 332 706 Strubbelig Receptor Gene Family AT4G22130 81.6 2.2e-173 606.3
Cma13g00416 . 344 711 Strubbelig Receptor Gene Family AT4G22130 80.2 4.4e-169 592.0
Cma14g01226 . 402 725 Strubbelig Receptor Gene Family AT4G22130 63.2 2.1e-118 423.7
Cma01g00022 CCT 943 1265 Strubbelig Receptor Gene Family AT4G22130 63.4 4.6e-118 422.5
Cma17g00644 CCT,CST 391 707 Strubbelig Receptor Gene Family AT4G22130 64.9 6.0e-118 422.2
Cma08g00837 CCT,CST 423 732 Strubbelig Receptor Gene Family AT4G22130 66.0 3.9e-117 419.5
Cma11g01861 CST 486 821 Strubbelig Receptor Gene Family AT4G22130 55.6 4.8e-107 386.0
Cma19g00972 CST 459 754 Strubbelig Receptor Gene Family AT4G22130 60.9 1.5e-105 380.9
Cma04g00965 . 378 695 Strubbelig Receptor Gene Family AT4G22130 55.4 4.3e-100 362.8
Cma03g00479 . 485 771 Strubbelig Receptor Gene Family AT4G22130 60.5 1.4e-98 357.8
Cma14g00431 . 404 726 Strubbelig Receptor Gene Family AT4G22130 52.0 2.5e-92 337.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004508 2 2 2 1 0 0 2 0 0 1 1 0 2 1 0 2 0 0 2 0 1 0 0 0 0 1 1 1 0 0 22
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69294 PF07714 PK_Tyr_Ser-Thr 7.50E-44 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00568 Cma_Chr18 FPKM 25.984398 30.21047 13.367308 12.318026 9.743654 9.959475 10.998973 1.207509 1.025077 0.870994