Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00614 ATGGAGTCTGGTGATGTTGAACAATCCTTGCTTCCCAAGCTGTCCGATTCCAATAAGAGGAATTCTCTCCAGAGAAGAAAATCGATCCATCATGAAATTTTTTCACGTTCATTAGAACACAACGATCAACCACGAAATGGTGATGAAGCATCTCATCAACGTGTGGTTGTTAAACAAGTTAGTTTTAGGAAAGTGTTTGTTGTGTTGGCTACTTATTTGGGAGGAGGAACACTTTGCTTCTTCCTTGTTGGAGATCAAATCAATGGCAAGAAAACAAACGGGATTGTTGATGCCATTTACTTTTGTGTTGTGACAATGACCACTGTTGGGTATGGTGATCTTGTTCCTAATAGCATTGGTGCAAAACTACTTGCTTGTGCTTATGTCTTCACTGGAATTACTCTTGGTGGGATGCTTCTTAGCAGGGCGGCCGATTACATTGTCGAAAAGCAGGAAATACTTCTTGTTAAGGCCATTTTCATGAGCAAAAAGATCAGCTCCGGTGAGCTCCTTCGAGAGTCTGTGGCACACAAACTCAAATACAAAATCCTTATGACTGGAATCGTCCTTTGGGTTCTCGTTGTTGTCGGTACTCTTTTCTTGATTCTGGTTGAGAAGTTTGAGTTCACAGATGCCTTTTATTGTGTTTGTTCCACAATCACAACTCTTGGCTATGGGGACAAGAGCTTCTCTACAACAACTGGTCGTGTTTTTGCTGTCATTTGGATAATGAGCAGTACCATCTGCTTGGCACAGTTCTTTCTGTACCTCGCCGAATTACGCGCCGAGAGGAGACAGAAATCACTAGTGAATAGGGTTCTCTCCCGAGACCTCACGTACTCCGATCTCGAAGAAGCAGACCTTGATCATGATAAAGTAGTAAGTGCTGCTGAATTTGTTGTATATAAACTGAAGGAAATGGGAAAGATCAATCAGGAAGATGTTTCACCAATACTTGACACTTTTTATAAGCTTGACATTGATCAATCAGGAAACTTAACAGAAGCTGATTTAGTAACTTCATAG 1026 41.23 MESGDVEQSLLPKLSDSNKRNSLQRRKSIHHEIFSRSLEHNDQPRNGDEASHQRVVVKQVSFRKVFVVLATYLGGGTLCFFLVGDQINGKKTNGIVDAIYFCVVTMTTVGYGDLVPNSIGAKLLACAYVFTGITLGGMLLSRAADYIVEKQEILLVKAIFMSKKISSGELLRESVAHKLKYKILMTGIVLWVLVVVGTLFLILVEKFEFTDAFYCVCSTITTLGYGDKSFSTTTGRVFAVIWIMSSTICLAQFFLYLAELRAERRQKSLVNRVLSRDLTYSDLEEADLDHDKVVSAAEFVVYKLKEMGKINQEDVSPILDTFYKLDIDQSGNLTEADLVTS 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5434263 5436913 - CmaCh18G006140.1 Cma18g00614 313952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00614 341 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 18 338 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma18g00614 341 MobiDBLite consensus disorder prediction 1 25 - -
Cma18g00614 341 Gene3D - 56 161 - -
Cma18g00614 341 SUPERFAMILY EF-hand 275 339 IPR011992 -
Cma18g00614 341 Gene3D - 164 267 - -
Cma18g00614 341 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 18 338 - -
Cma18g00614 341 SUPERFAMILY Voltage-gated potassium channels 178 278 - -
Cma18g00614 341 ProSitePatterns EF-hand calcium-binding domain. 287 299 IPR018247 -
Cma18g00614 341 ProSitePatterns EF-hand calcium-binding domain. 326 338 IPR018247 -
Cma18g00614 341 SUPERFAMILY Voltage-gated potassium channels 60 155 - -
Cma18g00614 341 Pfam Ion channel 68 148 IPR013099 -
Cma18g00614 341 Pfam Ion channel 189 259 IPR013099 -
Cma18g00614 341 PRINTS Two pore domain K+ channel signature 104 132 IPR003280 GO:0005267|GO:0016020|GO:0071805
Cma18g00614 341 PRINTS Two pore domain K+ channel signature 221 230 IPR003280 GO:0005267|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01377 Cma-Chr3:8737808 Cma18g00614 Cma-Chr18:5434263 1.54E-62 dispersed
Cma07g00133 Cma-Chr7:688150 Cma18g00614 Cma-Chr18:5434263 4.39E-63 dispersed
Cma09g01005 Cma-Chr9:5128133 Cma18g00614 Cma-Chr18:5434263 4.42E-95 dispersed
Cma18g00614 Cma-Chr18:5434263 Cma01g01079 Cma-Chr1:7960855 4.69E-120 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00614 K05389 - csv:101214791 543.502