Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00622 ATGGCCTCAAAGACGAGTTTGAAACCTTCTGCAAAGCAAACTAAGGGGATAACCTCTGTTAAATCGACTGATGCTAGTGATCTTAAATCCTTACCTTCAGTTGTTTCTGGAGGAGATGTATCAAACTCGACACACAGATTCTTGAATCATTCTGCTTTGATTGATTCATCGAAAGCCAAATCCTCTACTTTGAATCCTAAAGAATCTACTGAGTCTTGTAATCAGGAAGTCAATGAAAATTCCTTGAACTCTATAGATCTTGAGAAGAAAACATCTGAATGTGGGAGTGGGAAGGATAGTTCTGCTTCTGCCAAAGTCAATGATGGAACAAATAGTCTTGCCAAGACTAGTGGGAGCGCGAAAGTTAGTGACCATGTTGAGATGGTCGAAAGTGGCAAGAGTAGTATATGTCGAGGAAGTACGAGTAGCGATATCAGTGATGAAAGCACCTGTAGCAGCTTTAGTAGTAGTATCAGCAAGCCTCACAAATCAAATGACTTGAGATGGGAGGCCATCCAAGCTGTACGTGCAAGGGATGGGATGTTGGGATTAGGCCATTTTAGACTATTGAAGAGACTGGGTTGTGGCGATATCGGAAGTGTCTACTTGTCGGAATTGAGTGGCACTAAGTGTTATTTTGCAATGAAGGTTATGGACAAAGGGTCTCTGGCTAGTCGAAAGAAGTTGCTTCGTGCTCAGACCGAAAGAGAAATATTGCAGTCTCTTGATCATCCATTCCTTCCTACATTGTATACACATTTTGAGACTGATAAGTTCTCATGCTTGGTGATGGAGTTCTGCCCTGGGGGAGACTTACACACTCTAAGGCAGAGACAGCCGGGGAAGTATTTTCCCGAACAAGCGGTGAAATTTTACATAGCGGAGGTCCTCCTAGCACTCGAGTATCTTCACATGCTTGGGATTGTATATCGGGACCTTAAGCCCGAGAATGTTCTTGTGAGGGAAGATGGACACATTATGCTTTCAGACTTCGATCTTTCCCTAAGATGTGCTGTTAGTCCAACATTAGTGAAGGGCTCATGTTCTGAGTCCGAACCCTTACGAAAAAATTCAGCTTACTGTGCCCAGCCGGCTTGTATCGAGCCTTCCTGCATCCAGCCATCCTGTGTAGTTCCCACGTCGTGCTTTACTCCTCGACTTTTCTCTAGCAAGTCAAAGAAGGATAGAAAACCCAAGACTGAAATAGGAAACCAGGTAACACCATTGCCAGAGCTGATTGCAGAGCCGACGGAGGCGAGGTCAATGTCATTTGTTGGCACACATGAGTACTTGGCACCCGAGATCATTAAAGGCGAAGGTCACGGAAGTGCTGTCGACTGGTGGACTTTTGGAATCTTCCTATACGAACTGTTGTTTGGTAAAACTCCTTTTAAAGGATCTGGGAATCGGGCAACGTTGTTCAACGTCGTTGGTCAGCCATTGCGGTTTCCAGAATCCCCAGTTGTCAGTTTTGCTGCAAGGGATCTCATCAGGGGATTGCTCGTCAAGGAACCACAGCATAGGTTAGCTTACAAAAGAGGGGCAACTGAGATCAAGCAACACCCGTTCTTTGAAGGTGTTAACTGGGCGTTGATACGGTGTGCTTCGCCACCAGACGTACCGAAGCCTGTTGAGATCGAGAGGATACCATCACCAGCACCTCCAGTCAGTGGAAAAGCAGTGATGGCTACTAGACCTGCTCCTGATTCAAAATCATCTGATAATTATCTCGAGTTTGATTTCTTTTAG 1749 45.17 MASKTSLKPSAKQTKGITSVKSTDASDLKSLPSVVSGGDVSNSTHRFLNHSALIDSSKAKSSTLNPKESTESCNQEVNENSLNSIDLEKKTSECGSGKDSSASAKVNDGTNSLAKTSGSAKVSDHVEMVESGKSSICRGSTSSDISDESTCSSFSSSISKPHKSNDLRWEAIQAVRARDGMLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFETDKFSCLVMEFCPGGDLHTLRQRQPGKYFPEQAVKFYIAEVLLALEYLHMLGIVYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKGSCSESEPLRKNSAYCAQPACIEPSCIQPSCVVPTSCFTPRLFSSKSKKDRKPKTEIGNQVTPLPELIAEPTEARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCASPPDVPKPVEIERIPSPAPPVSGKAVMATRPAPDSKSSDNYLEFDFF 582
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 5507489 5509524 - CmaCh18G006220.1 Cma18g00622 313960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00622 582 PANTHER FLIPPASE KINASE 1-RELATED 27 582 - -
Cma18g00622 582 SMART serkin_6 187 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00622 582 MobiDBLite consensus disorder prediction 549 575 - -
Cma18g00622 582 MobiDBLite consensus disorder prediction 1 125 - -
Cma18g00622 582 Gene3D Phosphorylase Kinase; domain 1 180 272 - -
Cma18g00622 582 SUPERFAMILY Protein kinase-like (PK-like) 159 553 IPR011009 -
Cma18g00622 582 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672|GO:0006468
Cma18g00622 582 CDD STKc_phototropin_like 186 547 - -
Cma18g00622 582 MobiDBLite consensus disorder prediction 1 119 - -
Cma18g00622 582 Gene3D Transferase(Phosphotransferase) domain 1 273 541 - -
Cma18g00622 582 ProSiteProfiles Protein kinase domain profile. 187 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00622 582 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 27 582 - -
Cma18g00622 582 Pfam Protein kinase domain 421 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00622 582 Pfam Protein kinase domain 188 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00103 Cma-Chr3:1066159 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma06g00937 Cma-Chr6:6329480 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma07g01286 Cma-Chr7:7254872 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma11g01457 Cma-Chr11:9603199 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma14g00672 Cma-Chr14:3423555 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma14g02166 Cma-Chr14:14854695 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma20g00180 Cma-Chr20:873534 Cma18g00622 Cma-Chr18:5507489 0 dispersed
Cma13g00321 Cma-Chr13:3713637 Cma18g00622 Cma-Chr18:5507489 0 wgd
Cma18g00622 Cma-Chr18:5507489 Cma03g00597 Cma-Chr3:5305588 0 wgd
Cma18g00622 Cma-Chr18:5507489 Cma07g00363 Cma-Chr7:1552404 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69295 PF00069 Pkinase 9.20E-37 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00622 K08286 - csv:101213662 1021.15