Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00648 ATGCATGCCAATGCAATTCATTGCATAACAATGTCAACAAAGGGCATTGCCTTAGGCCTCATACTGTTCTTCAGCTTCGCATCGCTTAGCTTTGGAGCTCTTCAAGTGGGGTTTTACAAAGGAAAATGTGGGTTTAGAGATGTTGAATCCATTGTTGCCGGCGTTGTTGCCGACGCTGTTGAAAATGATGGCACTCTTGTTGCTGCTCTTCTTCGCTTGCAGTTTCATGATTGCTTTGTGTCTGGATGCGACGCTTCCCTACTCCTCGATGGGAGCGATACCGAGAAGCTTGCTCCGCCGAATTTGAGCGTTAGAGGGTATGATTTGATTGATGATGTTAAGATTTTTGTGGAGAGCGTTTGTCCTGGCGTTGTCTCGTGTGCTGATATTATAGCTATGGCTACAAGAGATGCAGTTCATTTGGCTGGAGGAGCACGATACCGTGTTGAAACTGGACGGAGAGACGGGTTCAAACCGGCGAAAAATGTGGATCTTCCGGGACCTTCAATATCAGTTCCAGACTCCATTGAAGCCTTCTCTAGAAGGAACCTTACTGCTACAGATATGGTTTATCTTCTTGGCGGCCATACTGTTGGTGTATCACAATGCTTATTCTTCAAGGATCGCCTCTATAACTACAAGAACACAGGGAGACCCGACCCGACCATCGATCGGTGGTTTCTCAACGACCTAAGAGACCAATGTCCTGAAGATTCTAACGTCGACAACGTCGTATTTCTCGACCAAACCAGTATGAGTTCTTTCGTGGTTGACAAGTCATTTCACAAGCAAATATGGCAACGAAGAGGCATACTGGAAATCGATCAACAACTTGCTTTGCATCCGTTAACGAAGGATTTGGTGACGAGGGTGGCGTTCGGATTCGACTTCGCTTCCAAATTTGGAGATGCCATGATCAAGATGGGAAGATTTGGAGTTCTCACTGGGTCTGATGGGGAGATTAGAAGAACATGTGAGGCTGTTAATTCAGCATGGTGA 999 46.15 MHANAIHCITMSTKGIALGLILFFSFASLSFGALQVGFYKGKCGFRDVESIVAGVVADAVENDGTLVAALLRLQFHDCFVSGCDASLLLDGSDTEKLAPPNLSVRGYDLIDDVKIFVESVCPGVVSCADIIAMATRDAVHLAGGARYRVETGRRDGFKPAKNVDLPGPSISVPDSIEAFSRRNLTATDMVYLLGGHTVGVSQCLFFKDRLYNYKNTGRPDPTIDRWFLNDLRDQCPEDSNVDNVVFLDQTSMSSFVVDKSFHKQIWQRRGILEIDQQLALHPLTKDLVTRVAFGFDFASKFGDAMIKMGRFGVLTGSDGEIRRTCEAVNSAW 332
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
18 5907554 5910328 + CmaCh18G006480.1 Cma18g00648 313986
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00648 332 Pfam Peroxidase 54 292 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PANTHER PEROXIDASE 22 327 - -
Cma18g00648 332 SUPERFAMILY Heme-dependent peroxidases 34 329 IPR010255 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 Gene3D - 38 329 - -
Cma18g00648 332 PANTHER PEROXIDASE 25-RELATED 22 327 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 CDD secretory_peroxidase 34 328 IPR033905 GO:0004601|GO:0042744
Cma18g00648 332 ProSitePatterns Peroxidases proximal heme-ligand signature. 188 198 IPR019793 -
Cma18g00648 332 ProSiteProfiles Plant heme peroxidase family profile. 33 329 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 ProSitePatterns Peroxidases active site signature. 67 78 IPR019794 GO:0004601
Cma18g00648 332 Gene3D Peroxidase, domain 2 166 309 - -
Cma18g00648 332 PRINTS Plant peroxidase signature 105 118 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Plant peroxidase signature 187 199 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Plant peroxidase signature 143 158 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Plant peroxidase signature 45 64 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Plant peroxidase signature 69 89 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Plant peroxidase signature 124 134 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Haem peroxidase superfamily signature 143 155 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Haem peroxidase superfamily signature 67 81 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Haem peroxidase superfamily signature 125 142 IPR002016 GO:0004601|GO:0006979|GO:0020037
Cma18g00648 332 PRINTS Haem peroxidase superfamily signature 188 203 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g00188 Cma-Chr8:1059496 Cma18g00648 Cma-Chr18:5907554 4.27E-72 dispersed
Cma18g00648 Cma-Chr18:5907554 Cma19g00264 Cma-Chr19:1878536 1.61E-81 dispersed
Cma18g00648 Cma-Chr18:5907554 Cma11g01837 Cma-Chr11:12261525 3.38E-74 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00648 K00430 - csv:101210173 460.299