Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00660 ATGGCCACTCCGCCGCTCCACGCCACCGCCTTATCTAACTCTTCACCTTACTCAAATCTCTACGGAATCCACCACAACCCTTCCCCTCTTCCTTTTCTGAATCAAGAACACCCGGCGTTTGATTTTGGAGAGCTTGAAGAAGCCATCGTTTTGCAAGGAGTTAAGCTCGGAAATGATGAACCCAAATCGCCACATTTTGTTTCAGGGAGGCCTGCTGCTACTCTTGAAATGTTCCCTTCTTGGCCAATAAGGTTTCAACAAACCCCAACAATGGGAGAAGGTTCAAAGTCAGAGAGCACTGATTCAGGATCAGCGAACATAAACAACGCCCTCACAAGCAAAACAGAGTTGGAAATGGAATCTGATTCGCCGATTAGCAGAAGGCTCTGTTCTTCAGCTCAAGGATTTGACCAAGTTCTTCATCATCATCATCATCTTCAAACAGAGCTGGAAGATGATGCCTTGAGAATTGAACCATCATCGCACCATAATCAATCCCCTGTCGAAGGAAAGAGAAAAGGAGGTGGTTCAACATCAGAGAGGCAGCTTGATCCAAAGACACTGAGACGTTTGGCTCAAAACAGAGAAGCTGCAAGAAAGAGCCGTCTGAGGAAGAAGGCTTATATTCAGCAACTAGAGTCCAGTAGAATGAAGCTCTCTCAGCTTGAACAAGACCTCCATAGAGCACGAGCTGCAATATTTGACATGGAGTATGCACGGTGGCTAGACGACGACCACCGTTTAATGGCAGAACTGCGGGCGGCGCTACATGGGTATCTCCCGGACGGCGACCTCCAAGCAATAGTAGACAATTACATATCCCACTACGACGAAATCTTTCACCTGAAAAGTGTGGCGGCGAAATCCGACGTGTTTCATTTGATTACCGGAATGTGGATGACTCCGGCGGAGCGTTGCTTCCTGTGGATCGGCGGATTCCGACCATCTAAGCTGATAGAGATGCTAATTCCACAATTAGAAACATTAACAGAGCAACAAGCTGTGGAAATCTGTAGTTTACAAAGATCTTCACAAGAAACAGAGGATGCTCTGTATCAAGGGCTCGAACAGCTCCAACATTCTCTCATACGTGCCATCGCCGGTACCGCCGTCGTCGACGGTATCAACCATATGGCCGCTGCCGCCGGCCAACTCTCCAATCTTGAAGGCTTCATCCGTCAGGCTGATATGTTGAGACAACAAACGCTTCATCAAGTACGTCGAATTCTGACAATTCGACAAGCCGCACGATGTTTCGTCGTGATTGGAGAATACTACGAAAGACTTCGAGCTCTTAGTTCCTTGTGGGTCTCCCGACCCAGAGAGTAA 1329 47.86 MATPPLHATALSNSSPYSNLYGIHHNPSPLPFLNQEHPAFDFGELEEAIVLQGVKLGNDEPKSPHFVSGRPAATLEMFPSWPIRFQQTPTMGEGSKSESTDSGSANINNALTSKTELEMESDSPISRRLCSSAQGFDQVLHHHHHLQTELEDDALRIEPSSHHNQSPVEGKRKGGGSTSERQLDPKTLRRLAQNREAARKSRLRKKAYIQQLESSRMKLSQLEQDLHRARAAIFDMEYARWLDDDHRLMAELRAALHGYLPDGDLQAIVDNYISHYDEIFHLKSVAAKSDVFHLITGMWMTPAERCFLWIGGFRPSKLIEMLIPQLETLTEQQAVEICSLQRSSQETEDALYQGLEQLQHSLIRAIAGTAVVDGINHMAAAAGQLSNLEGFIRQADMLRQQTLHQVRRILTIRQAARCFVVIGEYYERLRALSSLWVSRPRE 442
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6016786 6020920 + CmaCh18G006600.1 Cma18g00660 313998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00660 442 Pfam Seed dormancy control 249 323 IPR025422 GO:0006351|GO:0043565
Cma18g00660 442 ProSiteProfiles DOG1 domain profile. 231 439 IPR025422 GO:0006351|GO:0043565
Cma18g00660 442 Coils Coil 205 232 - -
Cma18g00660 442 Gene3D - 185 237 - -
Cma18g00660 442 MobiDBLite consensus disorder prediction 160 189 - -
Cma18g00660 442 SMART brlzneu 182 247 IPR004827 GO:0003700|GO:0006355
Cma18g00660 442 MobiDBLite consensus disorder prediction 86 107 - -
Cma18g00660 442 SUPERFAMILY Leucine zipper domain 186 228 IPR046347 GO:0003700|GO:0006355
Cma18g00660 442 Pfam bZIP transcription factor 186 226 IPR004827 GO:0003700|GO:0006355
Cma18g00660 442 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 184 228 IPR004827 GO:0003700|GO:0006355
Cma18g00660 442 PANTHER TRANSCRIPTION FACTOR TGA9 62 442 - -
Cma18g00660 442 PANTHER TRANSCRIPTION FACTOR TGA9 62 442 - -
Cma18g00660 442 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 189 204 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00660 Cma-Chr18:6016786 Cma06g00025 Cma-Chr6:157073 4.48E-111 dispersed
Cma20g00170 Cma-Chr20:819556 Cma18g00660 Cma-Chr18:6016786 1.06E-153 transposed
Cma13g00314 Cma-Chr13:3592187 Cma18g00660 Cma-Chr18:6016786 1.30E-164 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36784 PF14144 DOG1 2.10E-30 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00660 K14431 - csv:101204604 713.375