Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00661 | ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGACCTCGGGATGAAGCCCAGATGAGACAACAACAGCAGCAGCAACAACAACAACTACAGCAATCTAATTCTTCGGGTGTGCCGCCACCGAAGAAAAAGAGGAACCAACCAGGAACACCAAATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACACTAATGGCAACCAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTTCATAGAAGAGGACACAATTTGCCTTGGAAGTTAAAGCAAAAAAGCAACAAAGAGCCAAAAAGGAAGGTGTATTTATGCCCAGAACCCACATGCGTCCATCACGACCCATCAAGAGCTCTTGGTGACTTAACAGGTATCAAAAAACACTACTCCAGAAAGCATGGGGAGAAGAAATGGAAGTGCGATAAGTGCTCTAAACGCTATGCCGTTCAGTCCGATTGGAAGGCCCATTCCAAAACCTGTGGTACTCGCGAGTATCGCTGCGATTGTGGCACGCTTTTCTCCAGGCGGGATAGTTTTATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACATCCTACAAATTTAGGGTCAGCAATGGGAGGTCATTTATATGGAGGTAATAGCAATGTGGGGTTAACATTATCACAAGTTCCTCAAATTTCATCTCTTCAAGATATTCCCAATATAACCCAATCGGACGTCCTCCGCCTTGGTGGCGGAGGACGAACCGGGCAGTTCAATCATCTTCTTCCTCCGTCTATCGGCTCGTCATTTCGACCACCACCGCAACAGGCAATGCCGTCTTCGGCTGCGGCTGCGGCCTTCTTCTTGAATGATCAAACTAGCCAGAATAGCTTCCATGAGGATCATGGAAGTCAATCTCAACAAGGGTTGTTTGGAAACAAGGCGTTTCATGGATTAATGCAATTTTCTGATATGCAAAGCCATACGAGTAATAGTAACAACCCTTCCTCAAATCTCTTCAATTTGGGGTTCATTTCGAACCCTACTGGTGATAGTACAACGAATATGAACAACAACAACACCAACAACAGTAATAATACGAGTAATAGCAACAACAACAGCAACAGCAACAGCAACAACAACAATCTGCAATCGTCTTTGCTTAATCAATTCAGTGGCACGAACAATGGAAACAATGAAGGTGGTGCATCAAACATTTTCTCGATGATGGGCGATCAAATGAATTCAGGTGCAGTCCCGTCTCTCTATAGCAACACGACGGGAGTCGGCGGTAGTGGTACAAGCGGAGCAATTCCACACATGTCAGCCACGGCGCTTCTCCAAAAGGCAGCTCAATTAGGCTCAACGACATCAAGTAGCAACACAACAGCGACATTGCTAAGATCATTTGGAAGCTCGTCAACTTCAGGTGGAAAAGCATCCGACAGGACACTTTTCCCACCAAGCTACGGCGGAGTATTCGGCGAAAATGAGAGCAATCTTCAAGATCTGATGAACTCATTCACCACCGGAAGCTCAGCAGGCGGGCTCTTCGGTGGCGGAATGAGCTCATTCGGTACATTCGATGGCGGAAACAATAGACCAAACAACATGGAAACATTGGAAGATCCAAAATTACAACAGAATCTAAGCTCAGTTAGCATGGGAGGAACAGATAGATTAACAAGAGACTTCCTAGGTGTTGGACAAATTGTAAGAAGTATGAGTAGCGGAGGAGGCGGCGGTGGCAGCGGCGGCGGTTATTCCCAACGAGAACATAAACAACCACCGCAAGGGATCGTTATGGATGGAAATGAGAGCAATTCAGCTGCAACAAGCCAAGCATTTGGTGGTGGAGGAAATGGAAACTACCAGTGA | 1884 | 45.86 | MAASSSSVPLFGPRDEAQMRQQQQQQQQQLQQSNSSGVPPPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAMGGHLYGGNSNVGLTLSQVPQISSLQDIPNITQSDVLRLGGGGRTGQFNHLLPPSIGSSFRPPPQQAMPSSAAAAAFFLNDQTSQNSFHEDHGSQSQQGLFGNKAFHGLMQFSDMQSHTSNSNNPSSNLFNLGFISNPTGDSTTNMNNNNTNNSNNTSNSNNNSNSNSNNNNLQSSLLNQFSGTNNGNNEGGASNIFSMMGDQMNSGAVPSLYSNTTGVGGSGTSGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRSFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGTFDGGNNRPNNMETLEDPKLQQNLSSVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGSGGGYSQREHKQPPQGIVMDGNESNSAATSQAFGGGGNGNYQ | 627 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 6056044 | 6059306 | - | CmaCh18G006610.1 | Cma18g00661 | 313999 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00661 | 627 | Gene3D | Classic Zinc Finger | 125 | 204 | - | - | |
Cma18g00661 | 627 | SMART | c2h2final6 | 112 | 142 | IPR013087 | - | |
Cma18g00661 | 627 | SMART | c2h2final6 | 147 | 167 | IPR013087 | - | |
Cma18g00661 | 627 | SMART | c2h2final6 | 71 | 93 | IPR013087 | - | |
Cma18g00661 | 627 | MobiDBLite | consensus disorder prediction | 17 | 41 | - | - | |
Cma18g00661 | 627 | Pfam | Zinc-finger double-stranded RNA-binding | 71 | 93 | IPR022755 | - | |
Cma18g00661 | 627 | PANTHER | ZINC FINGER PROTEIN, PUTATIVE-RELATED | 1 | 589 | - | - | |
Cma18g00661 | 627 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 1 | 589 | - | - | |
Cma18g00661 | 627 | MobiDBLite | consensus disorder prediction | 327 | 410 | - | - | |
Cma18g00661 | 627 | MobiDBLite | consensus disorder prediction | 1 | 55 | - | - | |
Cma18g00661 | 627 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 71 | 93 | IPR013087 | - | |
Cma18g00661 | 627 | ProSitePatterns | Serine proteases, subtilase family, serine active site. | 435 | 445 | IPR023828 | - | |
Cma18g00661 | 627 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 73 | 93 | IPR013087 | - | |
Cma18g00661 | 627 | MobiDBLite | consensus disorder prediction | 603 | 627 | - | - | |
Cma18g00661 | 627 | SUPERFAMILY | beta-beta-alpha zinc fingers | 70 | 167 | IPR036236 | - | |
Cma18g00661 | 627 | MobiDBLite | consensus disorder prediction | 574 | 627 | - | - | |
Cma18g00661 | 627 | Gene3D | Classic Zinc Finger | 50 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00971 | Cma-Chr4:4993365 | Cma18g00661 | Cma-Chr18:6056044 | 0 | dispersed | |
Cma14g00204 | Cma-Chr14:883176 | Cma18g00661 | Cma-Chr18:6056044 | 1.68E-111 | dispersed | |
Cma18g00661 | Cma-Chr18:6056044 | Cma01g00059 | Cma-Chr1:264054 | 3.21E-109 | dispersed | |
Cma18g00661 | Cma-Chr18:6056044 | Cma06g00370 | Cma-Chr6:1719002 | 1.27E-112 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
36785 | PF12171 | zf-C2H2_jaz | 3.90E-05 | CL0361 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00661 | K25870 | - | csv:101219959 | 860.522 |