Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00661 ATGGCGGCTTCTTCTTCATCCGTTCCACTTTTCGGACCTCGGGATGAAGCCCAGATGAGACAACAACAGCAGCAGCAACAACAACAACTACAGCAATCTAATTCTTCGGGTGTGCCGCCACCGAAGAAAAAGAGGAACCAACCAGGAACACCAAATCCAGATGCGGAGGTGATTGCTTTGAGTCCAAAGACACTAATGGCAACCAATAGATTCATATGTGAAGTATGCAACAAAGGGTTTCAAAGAGAGCAAAATCTACAACTTCATAGAAGAGGACACAATTTGCCTTGGAAGTTAAAGCAAAAAAGCAACAAAGAGCCAAAAAGGAAGGTGTATTTATGCCCAGAACCCACATGCGTCCATCACGACCCATCAAGAGCTCTTGGTGACTTAACAGGTATCAAAAAACACTACTCCAGAAAGCATGGGGAGAAGAAATGGAAGTGCGATAAGTGCTCTAAACGCTATGCCGTTCAGTCCGATTGGAAGGCCCATTCCAAAACCTGTGGTACTCGCGAGTATCGCTGCGATTGTGGCACGCTTTTCTCCAGGCGGGATAGTTTTATTACACATAGAGCGTTTTGTGATGCATTGGCACAAGAAAGTGCAAGACATCCTACAAATTTAGGGTCAGCAATGGGAGGTCATTTATATGGAGGTAATAGCAATGTGGGGTTAACATTATCACAAGTTCCTCAAATTTCATCTCTTCAAGATATTCCCAATATAACCCAATCGGACGTCCTCCGCCTTGGTGGCGGAGGACGAACCGGGCAGTTCAATCATCTTCTTCCTCCGTCTATCGGCTCGTCATTTCGACCACCACCGCAACAGGCAATGCCGTCTTCGGCTGCGGCTGCGGCCTTCTTCTTGAATGATCAAACTAGCCAGAATAGCTTCCATGAGGATCATGGAAGTCAATCTCAACAAGGGTTGTTTGGAAACAAGGCGTTTCATGGATTAATGCAATTTTCTGATATGCAAAGCCATACGAGTAATAGTAACAACCCTTCCTCAAATCTCTTCAATTTGGGGTTCATTTCGAACCCTACTGGTGATAGTACAACGAATATGAACAACAACAACACCAACAACAGTAATAATACGAGTAATAGCAACAACAACAGCAACAGCAACAGCAACAACAACAATCTGCAATCGTCTTTGCTTAATCAATTCAGTGGCACGAACAATGGAAACAATGAAGGTGGTGCATCAAACATTTTCTCGATGATGGGCGATCAAATGAATTCAGGTGCAGTCCCGTCTCTCTATAGCAACACGACGGGAGTCGGCGGTAGTGGTACAAGCGGAGCAATTCCACACATGTCAGCCACGGCGCTTCTCCAAAAGGCAGCTCAATTAGGCTCAACGACATCAAGTAGCAACACAACAGCGACATTGCTAAGATCATTTGGAAGCTCGTCAACTTCAGGTGGAAAAGCATCCGACAGGACACTTTTCCCACCAAGCTACGGCGGAGTATTCGGCGAAAATGAGAGCAATCTTCAAGATCTGATGAACTCATTCACCACCGGAAGCTCAGCAGGCGGGCTCTTCGGTGGCGGAATGAGCTCATTCGGTACATTCGATGGCGGAAACAATAGACCAAACAACATGGAAACATTGGAAGATCCAAAATTACAACAGAATCTAAGCTCAGTTAGCATGGGAGGAACAGATAGATTAACAAGAGACTTCCTAGGTGTTGGACAAATTGTAAGAAGTATGAGTAGCGGAGGAGGCGGCGGTGGCAGCGGCGGCGGTTATTCCCAACGAGAACATAAACAACCACCGCAAGGGATCGTTATGGATGGAAATGAGAGCAATTCAGCTGCAACAAGCCAAGCATTTGGTGGTGGAGGAAATGGAAACTACCAGTGA 1884 45.86 MAASSSSVPLFGPRDEAQMRQQQQQQQQQLQQSNSSGVPPPKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARHPTNLGSAMGGHLYGGNSNVGLTLSQVPQISSLQDIPNITQSDVLRLGGGGRTGQFNHLLPPSIGSSFRPPPQQAMPSSAAAAAFFLNDQTSQNSFHEDHGSQSQQGLFGNKAFHGLMQFSDMQSHTSNSNNPSSNLFNLGFISNPTGDSTTNMNNNNTNNSNNTSNSNNNSNSNSNNNNLQSSLLNQFSGTNNGNNEGGASNIFSMMGDQMNSGAVPSLYSNTTGVGGSGTSGAIPHMSATALLQKAAQLGSTTSSSNTTATLLRSFGSSSTSGGKASDRTLFPPSYGGVFGENESNLQDLMNSFTTGSSAGGLFGGGMSSFGTFDGGNNRPNNMETLEDPKLQQNLSSVSMGGTDRLTRDFLGVGQIVRSMSSGGGGGGSGGGYSQREHKQPPQGIVMDGNESNSAATSQAFGGGGNGNYQ 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6056044 6059306 - CmaCh18G006610.1 Cma18g00661 313999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00661 627 Gene3D Classic Zinc Finger 125 204 - -
Cma18g00661 627 SMART c2h2final6 112 142 IPR013087 -
Cma18g00661 627 SMART c2h2final6 147 167 IPR013087 -
Cma18g00661 627 SMART c2h2final6 71 93 IPR013087 -
Cma18g00661 627 MobiDBLite consensus disorder prediction 17 41 - -
Cma18g00661 627 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Cma18g00661 627 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 1 589 - -
Cma18g00661 627 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 589 - -
Cma18g00661 627 MobiDBLite consensus disorder prediction 327 410 - -
Cma18g00661 627 MobiDBLite consensus disorder prediction 1 55 - -
Cma18g00661 627 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Cma18g00661 627 ProSitePatterns Serine proteases, subtilase family, serine active site. 435 445 IPR023828 -
Cma18g00661 627 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Cma18g00661 627 MobiDBLite consensus disorder prediction 603 627 - -
Cma18g00661 627 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Cma18g00661 627 MobiDBLite consensus disorder prediction 574 627 - -
Cma18g00661 627 Gene3D Classic Zinc Finger 50 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00971 Cma-Chr4:4993365 Cma18g00661 Cma-Chr18:6056044 0 dispersed
Cma14g00204 Cma-Chr14:883176 Cma18g00661 Cma-Chr18:6056044 1.68E-111 dispersed
Cma18g00661 Cma-Chr18:6056044 Cma01g00059 Cma-Chr1:264054 3.21E-109 dispersed
Cma18g00661 Cma-Chr18:6056044 Cma06g00370 Cma-Chr6:1719002 1.27E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36785 PF12171 zf-C2H2_jaz 3.90E-05 CL0361 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00661 K25870 - csv:101219959 860.522