Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00675 ATGGACATGAGGCAGTGTACCAGCAAGGACGTTGGAACCCGAAGGGAGATAGATTGGAGGTCCCACATCGATTGGAGAAGAGAACAACTGCGAGCGAGAACGCTAGGCTCCGAAACAGTGGATTGTGAGATCCCACCCATTTCGATCCAATCCAAGCAACGCCCCCAGCTGTATCCAGTTTCTCTTCACCCAGCGGGGCCTCTCTTTATAAGCGCCGACATACCCATCAACCCTTTGATCTTTCGCTCCATTCATCTTCAAATCTTCCCTTTCGATTTACACCCATTTCTATTTCCGTTACTGGGTACCGACGCCCTTGAATCAGCGCTCGATGAACTAGCCACTGCTTGCTTCATCGCTTCTTCCTCATCCATGGCGGCCGAGCCTCCCAATTGGCACGAAAGCATCTCCTCGGACAATACCAAAGGCCTTATTCTTGCTCTTTCTTCCAGCTTCTTCATTGGTGGGAGCTTCATTGTCAAGAAGAAGGGCTTGAAGAAAGCCGGTGCGTCGGGAATCAGAGCTGGAGCTGGCGGATTTACTTACTTATACGAGCCATTATGGTGGTTGGGCATGATAACAATGATTGTTGGAGAAATTGCTAACTTTGTGGCATACGCATTTGCACCAGCCTTATTAGTCACTCCATTGGGAGCTCTCAGCATCATAATCAGTGCTGTTCTTGCACATATCATTTTACAGGAGAAGCTACACATTTTTGGAGTTCTTGGCTGTATTCTATGCGTGGTCGGTTCCACAACGATTGTTCTTCATGCTCCCCAAGAACGTGAGATCGAATCCGTGACCGAAGTTTGGCAAATGGCAATGGAGCCAGCTTTTCTTTTGTATGCAACTCTGGTCATAACCTCTGCAGTTATACTCATATTCCACTTTATACCTCAATATGGTGAGACACACATAATGGTTTATATTGGAGTTTGTTCCCTATTAGGTTCGTTATCGGTTATGGGTGTTAAAGCTCTTGGAATTGCCATGAAGTTGACATTATCTGGAGTAAACCAGCTAGTTTATCCACAAACTTGGATTTTTGCAATACTTGTAGCCACATTTTTGCTGACCCAGATGAATTATCTGAACAAGGCCCTTGATACTTTTAACACTGCTGTTGTATCTCCCATATACTACGTGATGTTCACATCACTGACCATTTTGGCAAGTGTTATCATGTTTAAGGATTGGGATAGGCAGAGCCCAGCACAAGTCATCACAGAATTATGTGGATTTGTGACTATTCTTTCAGGAACCTTTCTTCTTCACAAAACAAAAGACATGGTTGATGGTTTATCGACATCGTCGCCAATACGACTTCTGAAGCACATGGACGAAGACAGATATAATGGCTTGGAAGGCATACCTCTAAGACGGCAAGAATCCATGAGTTCCATTGTGCATACAAACTCTCTCCCTAAAGGGGAGGGAGACAGAGACAGCGACAGAGGCATGGAGACTTACTTTAATCACAATCTGTTCGAGAGGCGTCCCATTGTGAAGAACAAGACTCCTGCTGCTAAATGGATCAAAGAATGGGTCCCCCAAGATGTTGTTGCAACTGGAGGAAAGTGCTTTCTTTTGAAATGGGTCACAGAGGATACCTTGAAGGCATTAAAGGAGAAGACAAAACAGTCGGAGGCACCAGAACCTGAACCAGAACCCACAACTGAAGTGCTTTTCCTTTGTAGCTATGAGGGCTGTGGAAAAACATTTATTGATGCAGGTGCTTTGAGGAAGCATTCTCACATTCATGGGGAGAGGCAATATGTTTGTCACTACGAAGGTTGTGGAAAGAAATTTTTGGATAGTTCGAAGTTGAAAAGACACTTTCTTATTCATACTGGTGAAAGAGATTTTGTGTGTCCTCATGAAGGCTGTGGTAAGGCATTTTCGCTGGATTTCAACTTGAGATCGCATATGAAAACGCATTCACAAGAAAACTATCATATCTGTCCATACCCTGATTGTGGAAAGAGATTTGCTCACGAGTACAAATTGAAAAACCACATTACATCTCACCATGAAAAGAACATGACAGCTGAAGTGGTCAAATATACACCACCTACTGAGAAGCAAACTAAAGTTTCTAAACCATCTGGAGGAGCTTATGCTTCTGCATCATCAGATCGCCCATATGCTTGCCCCTATGAAGGGTGTGAAAAGGCTTACATCCATGAATACAAACTTAAACTCCATTTAAGAAGAGAGCATCCTGGACATCTGGTAGAAGACAATGGCAATGCTCATCATAATGGGGAAAATGAGATAGAAGGCAGTGATCAAGACGGGTACGGCGGAAAACGGGTAAATACGAAAAACCAGAAACAGAACAAGCCTAAACCAAAGTTGAAGTTACCACCTTCCAAAATATCACAGCGAAAAGGCACAACTCCATCTCCTGCCCCAATGAGTAGTGTAAAAAAATCATGGCCTGCTAAAGAAGAAACCTACGAGGAGGAAGAAGATAGCGAAGAGACGGAGGAGGACCGTGAGAACATGGAGGAGGGTTGGCAATATGCCGAAAACGAAGACGATGATGAGGAAACAGAGTATGAAGATTAA 2574 44.02 MDMRQCTSKDVGTRREIDWRSHIDWRREQLRARTLGSETVDCEIPPISIQSKQRPQLYPVSLHPAGPLFISADIPINPLIFRSIHLQIFPFDLHPFLFPLLGTDALESALDELATACFIASSSSMAAEPPNWHESISSDNTKGLILALSSSFFIGGSFIVKKKGLKKAGASGIRAGAGGFTYLYEPLWWLGMITMIVGEIANFVAYAFAPALLVTPLGALSIIISAVLAHIILQEKLHIFGVLGCILCVVGSTTIVLHAPQEREIESVTEVWQMAMEPAFLLYATLVITSAVILIFHFIPQYGETHIMVYIGVCSLLGSLSVMGVKALGIAMKLTLSGVNQLVYPQTWIFAILVATFLLTQMNYLNKALDTFNTAVVSPIYYVMFTSLTILASVIMFKDWDRQSPAQVITELCGFVTILSGTFLLHKTKDMVDGLSTSSPIRLLKHMDEDRYNGLEGIPLRRQESMSSIVHTNSLPKGEGDRDSDRGMETYFNHNLFERRPIVKNKTPAAKWIKEWVPQDVVATGGKCFLLKWVTEDTLKALKEKTKQSEAPEPEPEPTTEVLFLCSYEGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKKFLDSSKLKRHFLIHTGERDFVCPHEGCGKAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHITSHHEKNMTAEVVKYTPPTEKQTKVSKPSGGAYASASSDRPYACPYEGCEKAYIHEYKLKLHLRREHPGHLVEDNGNAHHNGENEIEGSDQDGYGGKRVNTKNQKQNKPKPKLKLPPSKISQRKGTTPSPAPMSSVKKSWPAKEETYEEEEDSEETEEDRENMEEGWQYAENEDDDEETEYED 857
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6243887 6255030 + CmaCh18G006750.1 Cma18g00675 314013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00675 857 Gene3D Classic Zinc Finger 564 589 - -
Cma18g00675 857 Gene3D Classic Zinc Finger 621 648 - -
Cma18g00675 857 Gene3D Classic Zinc Finger 688 758 - -
Cma18g00675 857 SUPERFAMILY beta-beta-alpha zinc fingers 567 617 IPR036236 -
Cma18g00675 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 623 652 IPR013087 -
Cma18g00675 857 ProSitePatterns Zinc finger C2H2 type domain signature. 595 617 IPR013087 -
Cma18g00675 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 716 743 IPR013087 -
Cma18g00675 857 SUPERFAMILY beta-beta-alpha zinc fingers 711 739 IPR036236 -
Cma18g00675 857 MobiDBLite consensus disorder prediction 820 857 - -
Cma18g00675 857 MobiDBLite consensus disorder prediction 744 857 - -
Cma18g00675 857 Gene3D Classic Zinc Finger 590 620 - -
Cma18g00675 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 653 682 IPR013087 -
Cma18g00675 857 PANTHER MAGNESIUM TRANSPORTER-RELATED 134 459 - -
Cma18g00675 857 SUPERFAMILY beta-beta-alpha zinc fingers 647 680 IPR036236 -
Cma18g00675 857 ProSitePatterns Zinc finger C2H2 type domain signature. 718 741 IPR013087 -
Cma18g00675 857 PANTHER UNCHARACTERIZED 134 459 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cma18g00675 857 Pfam Zinc finger, C2H2 type 653 677 IPR013087 -
Cma18g00675 857 Pfam Zinc finger, C2H2 type 623 647 IPR013087 -
Cma18g00675 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 564 593 IPR013087 -
Cma18g00675 857 ProSiteProfiles Zinc finger C2H2 type domain profile. 593 622 IPR013087 -
Cma18g00675 857 MobiDBLite consensus disorder prediction 693 707 - -
Cma18g00675 857 MobiDBLite consensus disorder prediction 691 714 - -
Cma18g00675 857 Gene3D Classic Zinc Finger 649 678 - -
Cma18g00675 857 ProSitePatterns Zinc finger C2H2 type domain signature. 625 647 IPR013087 -
Cma18g00675 857 MobiDBLite consensus disorder prediction 744 766 - -
Cma18g00675 857 Pfam Magnesium transporter NIPA 139 431 IPR008521 GO:0015095|GO:0015693|GO:0016021
Cma18g00675 857 SUPERFAMILY Multidrug resistance efflux transporter EmrE 186 259 - -
Cma18g00675 857 SUPERFAMILY beta-beta-alpha zinc fingers 604 657 IPR036236 -
Cma18g00675 857 ProSitePatterns Zinc finger C2H2 type domain signature. 655 678 IPR013087 -
Cma18g00675 857 SMART c2h2final6 564 588 IPR013087 -
Cma18g00675 857 SMART c2h2final6 716 741 IPR013087 -
Cma18g00675 857 SMART c2h2final6 653 677 IPR013087 -
Cma18g00675 857 SMART c2h2final6 623 647 IPR013087 -
Cma18g00675 857 SMART c2h2final6 593 617 IPR013087 -
Cma18g00675 857 MobiDBLite consensus disorder prediction 794 808 - -
Cma18g00675 857 ProSitePatterns Zinc finger C2H2 type domain signature. 566 588 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00541 Cma-Chr4:2746738 Cma18g00675 Cma-Chr18:6243887 2.08E-160 dispersed
Cma04g03010 Cma-Chr4:19673505 Cma18g00675 Cma-Chr18:6243887 6.93E-159 dispersed
Cma08g01000 Cma-Chr8:6277536 Cma18g00675 Cma-Chr18:6243887 7.82E-135 dispersed
Cma11g00871 Cma-Chr11:4416771 Cma18g00675 Cma-Chr18:6243887 1.78E-131 dispersed
Cma11g01563 Cma-Chr11:10180015 Cma18g00675 Cma-Chr18:6243887 8.51E-15 dispersed
Cma14g00780 Cma-Chr14:3891221 Cma18g00675 Cma-Chr18:6243887 1.16E-14 dispersed
Cma16g00391 Cma-Chr16:1914175 Cma18g00675 Cma-Chr18:6243887 0 dispersed
Cma18g00851 Cma-Chr18:7449810 Cma18g00675 Cma-Chr18:6243887 7.36E-06 dispersed
Cma04g01857 Cma-Chr4:9428031 Cma18g00675 Cma-Chr18:6243887 2.53E-173 transposed
Cma18g00675 Cma-Chr18:6243887 Cma04g01855 Cma-Chr4:9405328 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36786 PF05653 Mg_trans_NIPA 9.50E-133 CL0184 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00675 - - mcha:111019807 655.981