Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00688 ATGGAGTGGAATGCAAGACCTTCTTTACAATGGGACTGGGAGAACTTAACGGTACTTAATCCAAGAATTTCCGGACATGGGGATATATTACATCCAGCTAATTTTGAAAATAAACATGGAATAAATGTTGGATCTTCCAATTCAGTTGGGGACGCCAGAATTACTGGTGGTCCTTTTTTTGAGTTAGGGAAAACTTCTCCAAAAAACTCTCAGCCAGTTTCCCAAAATTCATTGTCGATTGAGAAAAGTCGAACAACCAAATTCACGCTTGAGGGATTTGAGCCAACTTTAGAAGATATTGACAATAAATACGAATTTGTTGAGACTTCAATTTGCTCCTGTGAACAAATGCTCAGTCTGAAGCTTGGTAAGCAGGCATACTTCGAAAATACTAGTGCTGGAAATATTAAAAAGCCATCTGTTCCCTTGATGGAATCCCAAGCTACTCGAAAGAGGTGCCAGAATACACCATCCTCTCACTGCCAAGTTGAAGGTTGTAACATAGATCTTTCAAATGCTAAGGATTACTATCGCAAACATAGAGTTTGTGAAAGCCATTCCAAATCTCCCAAGGTCATCATTGGAGGCATAGAGCGTCGGTTTTGCCAACAATGTAGTAGGTTTCATGGCGTATCTGATTTTGATGAGAAGAAACGAAGCTGCCGTAGGCGTCTTTCTAATCATAATGCTCGACGTCGTAAGCCACAGTCAAAAGTGATCAGTCTGAACCCAGCAAGGCTATCTTCTTGGGATTTTGAGAGGCGACAGATCGACGTTTTCTCAGACAAATTATCGCTCATCTATCCTATATCTCATACAAACTCAGCATGGGAATCTGAGTTGAACTCCAGACACCCACAATATGGCCAGTATGCATTAAAGTCGGGACAAGCATGTGGTTCGACAGGGAAGCTTAACATATCCGGGAATGAGATGCGATGCGTGCATGCTATGCCTTATCACAACACCAGTAAGCTCGTGACCTTCAAGGGACCTGCAATCAGGGTTCTTGATGCAGCACAGGATCTTCAACGTGCTCTCTCTCTTCTGTCAACTGATATAAAGGGTCCATATGAGGCAAATCTCATTTCATCTGACAGCCCTAATCGTCTTGGTAACCCTGATTATGCTAACCAAACCGCCACATCGCAGTCGCCAATGGATCTCGGAATTCTTAGTCTGCCCTTTGCTTCAGTTGATTCAGGATGGCCCATTGAATCGCAGGTGCAAGTCCACCATCCGAGCATTGAAGGCAATGGTTTGTTACAAGACTTGCAGCTCTTCAAAACACCATGCGAGATTGGGATGTTTTCTAACAGTTAA 1323 43.01 MEWNARPSLQWDWENLTVLNPRISGHGDILHPANFENKHGINVGSSNSVGDARITGGPFFELGKTSPKNSQPVSQNSLSIEKSRTTKFTLEGFEPTLEDIDNKYEFVETSICSCEQMLSLKLGKQAYFENTSAGNIKKPSVPLMESQATRKRCQNTPSSHCQVEGCNIDLSNAKDYYRKHRVCESHSKSPKVIIGGIERRFCQQCSRFHGVSDFDEKKRSCRRRLSNHNARRRKPQSKVISLNPARLSSWDFERRQIDVFSDKLSLIYPISHTNSAWESELNSRHPQYGQYALKSGQACGSTGKLNISGNEMRCVHAMPYHNTSKLVTFKGPAIRVLDAAQDLQRALSLLSTDIKGPYEANLISSDSPNRLGNPDYANQTATSQSPMDLGILSLPFASVDSGWPIESQVQVHHPSIEGNGLLQDLQLFKTPCEIGMFSNS 440
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6324373 6326915 + CmaCh18G006880.1 Cma18g00688 314026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00688 440 SUPERFAMILY SBT domain 160 240 IPR036893 GO:0003677|GO:0005634
Cma18g00688 440 Gene3D - 157 222 IPR036893 GO:0003677|GO:0005634
Cma18g00688 440 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Cma18g00688 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 35 436 IPR044817 GO:0003677
Cma18g00688 440 Pfam SBP domain 161 234 IPR004333 GO:0003677
Cma18g00688 440 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 35 436 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00688 - - - cmax:111492685 654.055
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01843 Cma18g00688 CCT
Cma04g01843 Cma18g00688 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g00429 Cma-Chr14:2008201 Cma18g00688 Cma-Chr18:6324373 2.00E-39 dispersed
Cma14g02152 Cma-Chr14:14737897 Cma18g00688 Cma-Chr18:6324373 4.37E-36 dispersed
Cma18g00688 Cma-Chr18:6324373 Cma10g00286 Cma-Chr10:1271737 1.64E-33 dispersed
Cma18g00688 Cma-Chr18:6324373 Cma04g01843 Cma-Chr4:9287443 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1258 . . . . . Bpe10g00763 . Bma15g00259 Cmo04g01939 . . Cma18g00688 . Car18g00638 . Cpe09g00597 Cpe01g01623 . . . . . . . . . . . . . . . . . . . . . . Blo06g00809 . . . . . . . . . . Cma04g01843 . Car04g01848 . . Cpe03g01229 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014120 1 0 0 1 1 0 2 0 0 0 0 0 2 0 0 2 0 2 2 0 0 1 1 1 1 0 1 2 1 2 23
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36787 PF03110 SBP 1.40E-31 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00688 Cma_Chr18 FPKM 1.657143 1.539223 2.472583 2.20521 1.068577 1.225068 1.143536 16.627258 16.664167 16.917959