Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00689 ATGTCTCAGGTTGATAGCAGGAATTCCTCTGCTGCCAAACGTGCTAGAACCGATGGTAGCCGAAGGGAAGATGACTGGACGTGTCCTAGTTGTGGAAACGTCAATTTTTCATTTAGAACAACTTGCAATATGCGCAATTGCACTCAACCACGTCCGGCTGATCATAATTCTAAATCTGCTGCCAAGCCTGTTCATGCTCCACAGGGCTACTCCTATTCTGCCCCTTACATGGGTTCTGGTGCACCCTCTTCAATGTATCCTGGCGTACCACCTTATGGTTCTTCTATATTCAACGGTTCATCTATACCTCCCTATGATGTGCCATTTTCTGGGGGATCAGCATATCATTACAACTACGGCAGCCGATTTTCTGCAGGCAGCCCCTACAGACCTTTGCACCTATCTGGGCCTGCTCCTTATTCTAGTGGATCTTTGATGGGAAATAGTGCAGTATATGGTATGCCACCCATAATGGATCGCTATGGCATTGCTTTGCCCATGGGCCCTGGGACCATGGGTCCAAGGCCAAGTTTTTTTCCAGATGACATGTCGCAGAAGAAGGGTGCAGACGCTACTCGTGACAACGATTGGCCATGCCCCAAATGCGGAAACATCAATTTCTCATTTAGAACCGTCTGTAACATGAGGAAATGCAACACGCCAAAGCCTGGGTCACAGGGTCCCAAAAATGATAAAGGTTCTAAACAAAAGACGCCGGAGGGTAGCTGGAAGTGTGAGAAATGTAACAACATAAACTATCCATTCCGAACCAAATGCAATAGACAAAATTGTGGAGCCGACAAGCCAGCGGAGTCGGAGAAATCCCCATCACCGGCACAGGATGAAGACAATGAACAGTGGATTCCATATAATTTGATTAACAAGATAATTTTTGAACCACCAGAAAAGGGGAACCCTTTTGTGAGTTCTAGAACATGTTTGAGGGGGTTGAGAAGGTCCAGAGTTATCTTCCAGCGTTGCTCAATATGGGTGTCTGAAAGTCAGTCTTGTCGTCCTCATGTTGCAGCCGTTGTCAAGTCAGTCTACCTCTCTTGA 1056 46.69 MSQVDSRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAAKPVHAPQGYSYSAPYMGSGAPSSMYPGVPPYGSSIFNGSSIPPYDVPFSGGSAYHYNYGSRFSAGSPYRPLHLSGPAPYSSGSLMGNSAVYGMPPIMDRYGIALPMGPGTMGPRPSFFPDDMSQKKGADATRDNDWPCPKCGNINFSFRTVCNMRKCNTPKPGSQGPKNDKGSKQKTPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSPAQDEDNEQWIPYNLINKIIFEPPEKGNPFVSSRTCLRGLRRSRVIFQRCSIWVSESQSCRPHVAAVVKSVYLS 351
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6327746 6333094 - CmaCh18G006890.1 Cma18g00689 314027

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00689 351 Pfam Zn-finger in Ran binding protein and others 22 44 IPR001876 -
Cma18g00689 351 Pfam Zn-finger in Ran binding protein and others 194 223 IPR001876 -
Cma18g00689 351 Pfam Zn-finger in Ran binding protein and others 239 269 IPR001876 -
Cma18g00689 351 PANTHER ZINC FINGER PROTEIN 5 285 - -
Cma18g00689 351 SUPERFAMILY Ran binding protein zinc finger-like 17 54 IPR036443 -
Cma18g00689 351 MobiDBLite consensus disorder prediction 266 285 - -
Cma18g00689 351 Gene3D - 184 225 - -
Cma18g00689 351 Gene3D - 232 271 - -
Cma18g00689 351 Gene3D - 14 54 - -
Cma18g00689 351 SUPERFAMILY Ran binding protein zinc finger-like 233 270 IPR036443 -
Cma18g00689 351 SUPERFAMILY Ran binding protein zinc finger-like 189 225 IPR036443 -
Cma18g00689 351 PANTHER OS08G0521400 PROTEIN 5 285 - -
Cma18g00689 351 SMART zf_4 195 221 IPR001876 -
Cma18g00689 351 SMART zf_4 241 267 IPR001876 -
Cma18g00689 351 SMART zf_4 24 50 IPR001876 -
Cma18g00689 351 MobiDBLite consensus disorder prediction 11 25 - -
Cma18g00689 351 MobiDBLite consensus disorder prediction 220 241 - -
Cma18g00689 351 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00689 - - - cmax:111492911 601.282
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01842 Cma18g00689 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00689 Cma-Chr18:6327746 Cma05g01114 Cma-Chr5:8766781 9.99E-06 dispersed
Cma18g00689 Cma-Chr18:6327746 Cma04g01842 Cma-Chr4:9281138 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005402 3 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00689 Cma_Chr18 FPKM 8.810576 8.431041 8.26934 7.695831 11.422557 10.118003 12.089822 8.077514 7.599271 9.251783