Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00694 ATGGCCTCGGCTTGTGCTTCTTCTGCCATTGCAACGGTCGCAATATCTTCATCCAGTTCTCAAAAGAACGGGTGTCCAAAAGCTTCTAATTTCGTAACGGGGAAGAAATTGAGGCTAAGAAAGTACACCACCGTTGCTGTTGCTCCTCGATCTGCTCCGGTTTGTGCCGCTGCTGACCCCAACAGACCCCTTTGGTTCCCTGGTAGCACCCCTCCTCCGTGGCTCGACGGTAGCCTCCCCGGTGACTTTGGCTTCGACCCTCTTGGTCTTTCTTCTGATCCGGAGAGCCTGAGATGGAACCAGCAGGCGGAGCTGGTGCACTGCCGGTGGGCAATGTTAGGCGCTGCCGGAATTTTCATCCCGGAATTCTTGACAAAGATCGGAATTTTGAACACTCCATCATGGTACACCGCCGGAGAATTGGAATACTTCACCGACACCACCACCCTCTTCGTCGTGGAACTCATTTTCATCGGTTGGGCCGAGGGTAGACGGTGGGCCGACATCCTTAAACCCGGCTGCGTCAACACCGACCCAATCTTCCCCAACAACAAGCTCACCGGAACGGACGTTGGGTACCCAGGAGGGCTGTGGTTCGACCCGCTCGGATGGGGTAGCGGGTCACCCGAAAAGATCAAGGAGTTGAGAACTAAAGAGATCAAGAACGGTCGATTGGCTATGTTGGCAGTGATGGGTGCATGGTTTCAACACATTTACACTGGCACCGGTCCCATCGACAATCTTTTCGCGCACCTTGCCGATCCCGGTCACGCCACCGTCTTCGCCGTAAGTTTTAACCTAGGATTTGGAAGGCTTTTACTCCCAAGTGAAGAAGTTGAAGAGCATAGGAGACGTGTGTATCAAATCATAACTTGA 876 53.31 MASACASSAIATVAISSSSSQKNGCPKASNFVTGKKLRLRKYTTVAVAPRSAPVCAAADPNRPLWFPGSTPPPWLDGSLPGDFGFDPLGLSSDPESLRWNQQAELVHCRWAMLGAAGIFIPEFLTKIGILNTPSWYTAGELEYFTDTTTLFVVELIFIGWAEGRRWADILKPGCVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADPGHATVFAVSFNLGFGRLLLPSEEVEEHRRRVYQIIT 291
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6352027 6353714 - CmaCh18G006940.1 Cma18g00694 314032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00694 291 Pfam Chlorophyll A-B binding protein 71 237 IPR022796 -
Cma18g00694 291 Gene3D Chlorophyll a/b binding protein domain 72 257 - -
Cma18g00694 291 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 1 263 IPR001344 GO:0009765|GO:0016020
Cma18g00694 291 PANTHER CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC 1 263 - -
Cma18g00694 291 SUPERFAMILY Chlorophyll a-b binding protein 57 266 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00139 Cma-Chr11:750299 Cma18g00694 Cma-Chr18:6352027 1.48E-75 dispersed
Cma12g00551 Cma-Chr12:2857173 Cma18g00694 Cma-Chr18:6352027 1.99E-60 dispersed
Cma18g00694 Cma-Chr18:6352027 Cma01g00793 Cma-Chr1:4282436 8.04E-72 dispersed
Cma11g00746 Cma-Chr11:3627834 Cma18g00694 Cma-Chr18:6352027 7.30E-101 transposed
Cma11g01642 Cma-Chr11:10800460 Cma18g00694 Cma-Chr18:6352027 1.62E-34 transposed
Cma15g00603 Cma-Chr15:2856967 Cma18g00694 Cma-Chr18:6352027 1.32E-34 transposed
Cma18g00694 Cma-Chr18:6352027 Cma04g01836 Cma-Chr4:9264652 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00694 K08908 - csv:101214055 503.056