Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00695 ATGAGAACTCGAACAGGCCTCTGTTACCCTCGACTTGAAACCACCCTCTGCTCCGACAGCTCTCATCGCAAAAGAAATCACGACGTCGCCGCCGACCGTCGCCGCCATTTTTGTCGGAAAAGAACCAAGCTCTCTCCACACATCACTCCGCTGCCGCCGCCTTCTGATTTGTTTGATTCCTTGCCTGACGACCTCGTCATTTCGATTCTCTCTAAACTCAGCTCCGCCGCCTCATCCCCCTCCGATTTCATCAACATCTTGCTAACATGCAAAAGATTAAACAATTTAGGACTTATTCCCATGGTGTTATCCAAAGCTTCTCAGAAGACGTTTGCAATTAAGGCACGGAACTGGTCGGAATCCGCTCATCGGTTTCTGAAGCGGTGTTCCGACGCCGGAAATGTTGATGCCAGTTATACCCTTGGCATGATTCGTTTCTACTGTTTGCAAAACAGAGGAAGTGGAGCTTCGCTGATGGCTAAAGCGGCGATTTGTTCCCACGCGCCGGCGCTTTACTCACTCGCTGTCATTCAGTTCAACGGTAGCGGCGGGTCCAAAAGCGATAAGGATCTCCGTGCCGGAGTTGCTCTTTGTGCACGTGCTGCTTTTCTCGGTCACGTCGACGCGCTTAGAGAACTTGGGCATTGTCTTCAAGACGGTTACGGCGTTCGTCAGAATATAACAGAGGGGCGTCGGTTTCTTGTCCAGGCCAACGCACGTGAACTCGCCGCCGTGCTCTCGTCGGAGGCGGGTTCTTCGGTTATTGCATCGCGGTCTTGTCTTACGTGGAACCCTCACGTTCCACACCGGCACGTAACGGGCTCGGGATGTCCGTTGTTAAGCGATTTCGGTTGTAATATCCCAGCGCCGGAAGCTCATCCGGTGAGTCGGTTTATGGCGGAGTGGTTTGGGGCACGTGGGGAGTCGCCGGGGCTTGGGCTGAGGATGTGTTCGCACGTGGGATGTGGACGGCCGGAAACGAGACAGCATGAGTTCCGTCGATGTTCTGTTTGTGGCTCTGTTAATTACTGCTCACGTGCGTGTCAGGCGCTGGATTGGAAACTCCGCCATAAGATGGATTGTGCGCCGGTTGAACGTTGGGTTGATGATAACGGCGACGGTGGGGCCGATGATATCATGGCCGAAAGTTGA 1152 53.82 MRTRTGLCYPRLETTLCSDSSHRKRNHDVAADRRRHFCRKRTKLSPHITPLPPPSDLFDSLPDDLVISILSKLSSAASSPSDFINILLTCKRLNNLGLIPMVLSKASQKTFAIKARNWSESAHRFLKRCSDAGNVDASYTLGMIRFYCLQNRGSGASLMAKAAICSHAPALYSLAVIQFNGSGGSKSDKDLRAGVALCARAAFLGHVDALRELGHCLQDGYGVRQNITEGRRFLVQANARELAAVLSSEAGSSVIASRSCLTWNPHVPHRHVTGSGCPLLSDFGCNIPAPEAHPVSRFMAEWFGARGESPGLGLRMCSHVGCGRPETRQHEFRRCSVCGSVNYCSRACQALDWKLRHKMDCAPVERWVDDNGDGGADDIMAES 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6365647 6367136 + CmaCh18G006950.1 Cma18g00695 314033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00695 383 Pfam MYND finger 322 361 IPR002893 -
Cma18g00695 383 SUPERFAMILY HCP-like 119 237 - -
Cma18g00695 383 SUPERFAMILY F-box domain 54 131 IPR036047 GO:0005515
Cma18g00695 383 SUPERFAMILY HIT/MYND zinc finger-like 315 366 - -
Cma18g00695 383 PANTHER MYND DOMAIN-CONTAINING 1 375 IPR044508 -
Cma18g00695 383 Gene3D - 312 366 - -
Cma18g00695 383 ProSiteProfiles Zinc finger MYND-type profile. 319 361 IPR002893 -
Cma18g00695 383 Gene3D Tetratricopeptide repeat domain 99 254 IPR011990 GO:0005515
Cma18g00695 383 PANTHER OSJNBA0044M19.1 PROTEIN 1 375 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00695 - - - csv:101213808 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00062 Cma-Chr10:232910 Cma18g00695 Cma-Chr18:6365647 2.66E-147 dispersed
Cma13g00804 Cma-Chr13:6830017 Cma18g00695 Cma-Chr18:6365647 5.98E-143 dispersed
Cma18g00318 Cma-Chr18:1695203 Cma18g00695 Cma-Chr18:6365647 1.22E-140 dispersed
Cma18g00695 Cma-Chr18:6365647 Cma04g01307 Cma-Chr4:6653706 8.32E-07 dispersed
Cma12g00081 Cma-Chr12:307436 Cma18g00695 Cma-Chr18:6365647 1.47E-174 wgd
Cma18g00695 Cma-Chr18:6365647 Cma04g01835 Cma-Chr4:9255453 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1251 . . . . . Bpe10g00767 . Bma15g00254 . Cmo18g00682 . Cma18g00695 . Car18g00645 . . . . . . . . . . . . . . . . . . . . . . . . . Blo06g00813 . . . . . . . . . . . . . . . . . . . . . . . Cla11g01338 Cam11g1396 Cec11g1418 Cco11g1415 . . Cre11g1794 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002511 1 2 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 2 2 2 3 2 1 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00695 Cma_Chr18 FPKM 2.298107 1.407849 6.122076 7.400956 3.912551 4.100859 3.151901 36.193924 37.326668 40.46093