Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00698 ATGAGCGGCCAACCAAAATCCAACGAACGGATCCGCTATTCGCCTTCGTATAAATTGGAAAGCTGTTTTGATCTTTCGATATCTTTTGGAGTGGTGAAGGAAGTACTGGAGACGCAAACCTACTACATTATGGAGGACGATAGCAGAAATCTGGAGTTGAAGCATCTAGGTTTTGTGAGGATCGCTGTGATTCAGACGATTGCGTGTGTTACGAATCTGTATGATTACGCGAAGCAGAACTCCGGACCTTTGAGATCTGCGGTTGAAAATGTGGAGAGCGCTGTAAACACAGTCGTAGCGCCTGCTTATGAAAAGCTCCGAATCGCGCCTGATGATGTTCTTCTTTTTCTCGACGATAAGGTTGACAAAGCAACGCATGAGTTTGATAAATCTGCTCCTCCTCTGGCAAAACAAGCCGTTCAAATTACGCAGCATTTAGTCCAAAAGGCTGCTCGAACAGGGCAAGAACTTGTGAATGAGTTTCAAACTGGTGGACCACGCGCAGCATTTCAGTATGCAGCGAAGGAGTACAAGCAGCTGGTTCTAAACCAAGGAGTGAAGATTTGGGCAGGGCTGAACCGGGTTCCATCGTTCCACAAGTTAGCAGACAAGGCAGTGCCATCGGTAGAACAGTGGTTGGAGAAGTACAACTGCACGGTGAAAGAGATGAGGCAGAAGGGCTACTACGTGTTTGCCTATCTTCCTGAAGTTCCTGTGAGTGAGATAGCTAAGGCATTTAAGGAGGGGGAGGCGAAGAACAAGGAAGGAACACCTCCTCCTCCACCACCTACTTCTGAACAAGCTCCTGCTCCACATGAGAACAAAGTGAGTTCAGATTCCGAATTGGATTCAAATTCAAATTAG 864 46.88 MSGQPKSNERIRYSPSYKLESCFDLSISFGVVKEVLETQTYYIMEDDSRNLELKHLGFVRIAVIQTIACVTNLYDYAKQNSGPLRSAVENVESAVNTVVAPAYEKLRIAPDDVLLFLDDKVDKATHEFDKSAPPLAKQAVQITQHLVQKAARTGQELVNEFQTGGPRAAFQYAAKEYKQLVLNQGVKIWAGLNRVPSFHKLADKAVPSVEQWLEKYNCTVKEMRQKGYYVFAYLPEVPVSEIAKAFKEGEAKNKEGTPPPPPPTSEQAPAPHENKVSSDSELDSNSN 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6372938 6374457 - CmaCh18G006980.1 Cma18g00698 314036

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00698 287 MobiDBLite consensus disorder prediction 248 287 - -
Cma18g00698 287 PANTHER RUBBER ELONGATION FACTOR PROTEIN 44 257 - -
Cma18g00698 287 PANTHER REF/SRPP-LIKE PROTEIN OS05G0151300/LOC_OS05G05940 44 257 IPR008802 -
Cma18g00698 287 MobiDBLite consensus disorder prediction 270 287 - -
Cma18g00698 287 Pfam Rubber elongation factor protein (REF) 49 248 IPR008802 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00698 - - - cmos:111449484 511.146
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01832 Cma18g00698 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g01119 Cma-Chr10:7685586 Cma18g00698 Cma-Chr18:6372938 1.21E-19 dispersed
Cma11g01137 Cma-Chr11:6518534 Cma18g00698 Cma-Chr18:6372938 1.31E-32 dispersed
Cma18g00698 Cma-Chr18:6372938 Cma04g01832 Cma-Chr4:9250045 4.85E-134 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1247 . . . . . Bpe10g00769 . Bma15g00253 Cmo04g01928 Cmo18g00684 . Cma18g00698 . Car18g00647 Sed06g1751 Cpe09g00588 Cpe01g01614 Bhi07g01923 Tan04g0049 Cmetu10g1680 Lac13g0054 Hepe10g1517 . . . . . . . . . . . . . Lsi04g00680 . . Cme10g00660 Blo06g00814 . . . . . . . . . . Cma04g01832 . . . . . . . . . . . . Cla11g01340 Cam11g1398 Cec11g1420 Cco11g1417 Clacu11g1555 Cmu11g1376 Cre11g1796 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007322 0 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 3 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00698 Cma_Chr18 FPKM 75.930527 79.618927 185.721756 174.5186 63.123779 73.581596 65.384422 328.619843 341.940369 301.609558