Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma18g00700 | ATGGCCGACGATTGTCCAGATAAGAATATCCTCCAGAGCACTGCTCTTCTCCAGTTTCGATTCGATTTGGAAAGATTTGGAACGATCGATTCTGTAGTATTCGTTAATAGTCTACGAGAGTGTTTAATAATTTGGAAGGAAATTTGGGGAATGAGTTGCAGGAGCGTGATGAGCGTACCGGCGGATCAAGGATTGTTTCTATCAATGCTTCTGAAACTTATGAACGCAAAGAAAACGATAGAGATCGGCGTATTCACCGGCTATTCGCTCCTAACCACTGCGCTAGCGCTGCCCGCTGATGGTCAGATAACAGCCATTGATGTAAACAGAGAATCATTTGAGATCGGTTTGCCATTTTTCAAAAAGGCAGGAGTTGATCACAAGATCAATTTTGTGGAATCAATGGCATTGGTTGTCCTCAACGACCTCATCAATGACGACACAAATACCGAATTTGATTTTGCATTTGTGGATGCTGTGAAAGGAGAATACATTAAGTACCACGAGTTACTTTTGAGATTGGTGAAAGTAGGTGGAATAATTGCATATGACAATACTTTATGGTATGGATCAGTGGCACAAAATGATGACGTCGTTCCTCATGATTTGAAAGCTAATAGAAGTCATATACGAGAATTCAATGCTTTTTTAGTTAATGATTCACGTGTGGAGATAGCTCTCCTCTCCATTGGAGATGGCCTCACTCTTTGCCGACACGGTGGGATGATGAGCGCGAGAGATGAGGAATCAGAGAACTACGGAGATTATTTGGCGCTGCTCACACATTTCCTTCGCCGTCTCCGGATGCTTATTATGAAATTTTCACCAAGGCAGGATGCTCTAAGAGCTCTGTGGTATGCAGCTTATCCTGATCAAGAGCTTCAGGCGTTGACATCTTTCCAATGCCTGTTAAGAAAACAAGGAAGAAAACCAGCTGCTTAG | 942 | 42.68 | MADDCPDKNILQSTALLQFRFDLERFGTIDSVVFVNSLRECLIIWKEIWGMSCRSVMSVPADQGLFLSMLLKLMNAKKTIEIGVFTGYSLLTTALALPADGQITAIDVNRESFEIGLPFFKKAGVDHKINFVESMALVVLNDLINDDTNTEFDFAFVDAVKGEYIKYHELLLRLVKVGGIIAYDNTLWYGSVAQNDDVVPHDLKANRSHIREFNAFLVNDSRVEIALLSIGDGLTLCRHGGMMSARDEESENYGDYLALLTHFLRRLRMLIMKFSPRQDALRALWYAAYPDQELQALTSFQCLLRKQGRKPAA | 313 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 18 | 6382804 | 6392963 | - | CmaCh18G007000.1 | Cma18g00700 | 314038 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma18g00700 | 313 | CDD | AdoMet_MTases | 80 | 183 | - | - | |
| Cma18g00700 | 313 | Gene3D | Vaccinia Virus protein VP39 | 45 | 239 | IPR029063 | - | |
| Cma18g00700 | 313 | PANTHER | O-METHYLTRANSFERASE-RELATED | 52 | 238 | - | - | |
| Cma18g00700 | 313 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 47 | 239 | IPR029063 | - | |
| Cma18g00700 | 313 | Pfam | O-methyltransferase | 54 | 239 | IPR002935 | GO:0008171 | |
| Cma18g00700 | 313 | ProSiteProfiles | SAM-dependent O-methyltransferase class I-type profile. | 11 | 240 | IPR002935 | GO:0008171 | |
| Cma18g00700 | 313 | PANTHER | FLAVONOID 3',5'-METHYLTRANSFERASE-LIKE | 52 | 238 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma18g00700 | Cma-Chr18:6382804 | Cma18g00702 | Cma-Chr18:6407403 | 1.56E-112 | dispersed | |
| Cma18g00700 | Cma-Chr18:6382804 | Cma18g00701 | Cma-Chr18:6402209 | 1.12E-102 | tandem | |
| Cma18g00700 | Cma-Chr18:6382804 | Cma04g01831 | Cma-Chr4:9243157 | 1.20E-06 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma18g00700 | K00588 | K13272 | csv:101212121 | 290.812 |