Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00705 ATGGATTGGCAAGGGCAGAAGCGTGCGGAGCAGATGATGCAGATTATGTTGCTTGCATTTGCCGTGGCGGCCTTTTCGACTGGCTATGTTATGGGATCGTTTCGGATGATGATCTTGGTTTACGCCGGCGGTGTGATTCTCACCACATTGATTACTGTTCCGAATTGGCCTTTCTTTAATCTCCACCCGCTCAAATGGTTGGATCCTGGTGTGGCTGAAAAATACCCTAAGCCGCAGCAGCCGGAGCCTGCGGTTTTGAAGAAGAAACCAACTAAGAAGTACGTCTGTTTGATTTGA 297 48.82 MDWQGQKRAEQMMQIMLLAFAVAAFSTGYVMGSFRMMILVYAGGVILTTLITVPNWPFFNLHPLKWLDPGVAEKYPKPQQPEPAVLKKKPTKKYVCLI 98
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6433535 6434464 + CmaCh18G007050.1 Cma18g00705 314043

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00705 98 Pfam Microsomal signal peptidase 12 kDa subunit (SPC12) 1 69 IPR009542 GO:0005787|GO:0006465|GO:0016021
Cma18g00705 98 PANTHER MICROSOMAL SIGNAL PEPTIDASE 12 KDA SUBUNIT 1 90 IPR009542 GO:0005787|GO:0006465|GO:0016021
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00705 K12946 SPCS1; signal peptidase complex subunit 1 [EC:3.4.-.-] - csv:101211317 168.318
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00705 Cma-Chr18:6433535 Cma04g01830 Cma-Chr4:9235655 6.42E-53 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1222 . . . . . . . . . Cmo18g00694 . Cma18g00705 . Car18g00651 . Cpe09g00583 . . . . . . . . . . . . . . . . . . . Lsi04g00673 . . Cme10g00650 . . . . . . . . . . . . . Car04g01844 . . . . . . . . . . Cla11g01348 Cam11g1406 Cec11g1432 Cco11g1426 Clacu11g1563 Cmu11g1384 Cre11g1804 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008309 1 1 1 1 1 0 2 1 1 0 2 2 1 1 1 1 2 1 1 2 1 1 0 0 1 2 2 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00705 Cma_Chr18 FPKM 39.937038 44.659534 43.365265 43.988312 29.20459 28.391821 34.136517 49.355938 56.773941 56.264946