Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00708 ATGAAGCTGGATACTAGCGGTCTTGAATCGGCCACTTATTTTTCTGGTTCGAGTAGTACTGAGCTACTCAATGGGTTATCGACCGTGCCATCTTTCGATGTTCCAAATGCTGCTAATTTTGATGGATTTCAGAAAGACGCTATTCAGATGGTGAAGCCTGCAAAGGGAACGACAACTCTGGCCTTCATTTTCAAGGAAGGAGTCATGGTTGCTGCAGATTCCCGAGCGAGCATGGGAGGATATATATCATCTCAATCTGTGAAGAAGATCATTGAAATAAATCCATACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATCTTGGCATTAAGTGTCGACTACATGAGTTGGCAAACAAGCGCAGAATTTCAGTGACGGGTGCTTCCAAGTTGCTGGCTAACATTCTGTATTCCTACCGAGGAATGGGTCTTTCAGTTGGCACCATGATTGCTGGATGGGATGAAACTGGTCCTGGATTGTATTATGTTGACAGCGAAGGAGGAAGATTAAAGGGAACTCGATTTTCAGTTGGATCTGGTTCGCCTTATGCTTACGGCGTCCTGGACAACGGCTATCGGTACGATATATCAATTGAAGAAGCTGCTGAATTGGCTAGAAGAGCAATTTATCACGCAACGTTCCGAGACGGAGCAAGTGGTGGAGTTGCTAGTGTTTATTATGTTGGACCAAATGGATGGAAGAAGCTATCTGGTGATGATGTTGGAGAACTTCACTTCAAATATTACCCGGTTGTGGCTGATACGGTCGAACAGGAAATGGTTGAAATCGCTGGATAG 819 45.05 MKLDTSGLESATYFSGSSSTELLNGLSTVPSFDVPNAANFDGFQKDAIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDNGYRYDISIEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKLSGDDVGELHFKYYPVVADTVEQEMVEIAG 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6450457 6454540 - CmaCh18G007080.1 Cma18g00708 314046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00708 272 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 57 266 IPR029055 -
Cma18g00708 272 ProSiteProfiles Proteasome beta-type subunit profile. 56 235 IPR023333 -
Cma18g00708 272 PANTHER PROTEASOME SUBUNIT BETA 30 270 - -
Cma18g00708 272 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 50 255 IPR029055 -
Cma18g00708 272 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 30 270 - -
Cma18g00708 272 PRINTS Proteasome component signature 64 79 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma18g00708 272 PRINTS Proteasome component signature 185 196 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma18g00708 272 PRINTS Proteasome component signature 196 207 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma18g00708 272 PRINTS Proteasome component signature 221 232 IPR000243 GO:0004298|GO:0005839|GO:0051603
Cma18g00708 272 Pfam Proteasome subunit 55 235 IPR001353 GO:0005839|GO:0051603
Cma18g00708 272 CDD proteasome_beta_type_5 57 244 - -
Cma18g00708 272 ProSitePatterns Proteasome beta-type subunits signature. 60 107 IPR016050 GO:0005839|GO:0051603
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00708 K02737 PSMB5; 20S proteasome subunit beta 5 [EC:3.4.25.1] - vvi:100261458 498.049
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00708 Cma-Chr18:6450457 Cma12g00273 Cma-Chr12:1417007 4.36E-18 dispersed
Cma12g00067 Cma-Chr12:248134 Cma18g00708 Cma-Chr18:6450457 1.56E-178 wgd
Cma18g00708 Cma-Chr18:6450457 Cma04g01824 Cma-Chr4:9201497 3.03E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1185 Blo01g00364 Blo16g01195 Bda01g02184 . Bpe13g00527 . . . . Cmo18g00697 . Cma18g00708 . Car18g00654 . Cpe09g00580 . . . . . . . . . . . . . . . . . Cone8ag0741 . . . . Cme10g00645 . . . . . . Bma01g00017 . . . . . . . . . . . . . . . . . Cla11g01353 Cam11g1411 Cec11g1437 Cco11g1432 Clacu11g1568 Cmu11g1388 Cre11g1809 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002048 5 2 1 1 1 2 3 1 2 2 2 2 3 1 2 3 1 2 3 1 2 1 1 2 2 1 2 6 8 1 66
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00708 Cma_Chr18 FPKM 12.353796 14.516915 12.662963 15.115533 4.872414 6.306194 5.496025 13.22824 11.364034 11.005769