Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00710 ATGGATGTTCCCGACGTTGAAGAAATACTTTTTTCTCCCACTGATGCAAAGTTGCATGGAGAAATGTACAAGAAACTCGCTGCAATTTATTGCCAGGTTATGTCAATTTTCCCTTCCTTGGAAGCAGCAAGACCTAGGAGCAAAACTGGTATTCAGGCTTTATGTTCATTGCATGTAGCTCTTGAGAAGGCCAAGAATACTCTTCGGCACTGCTCGGAATCCAGTAAACTCTACTTGGCTATAACTGGAGATGCTGTTCTAGCCAAATTTGAAAAGGCAAGATGTTCTCTTGAAGTTAGTCTTGTATGCGTTGAAGATATTGTTTCAGAATCAATTGGATTTCAGATTCAGCAGATAGTGGATGAACTAAAGAACATTGTTTTCTTACTTGACCCACTCGAGAAACAAGTTGGTGATGATATCATTGCATTACTTTTGCAAGAAAGAAAATTTGATGATTCCAATGGTCATAATGAGCTGGAGCATTTTCATCAGGCCGCCACAAAACTGGGAATTACATCCTCCAAAGCAGCCCTCACAGAGAGGAGAGCTCTTAAGAGACTCGTAGAACGAGCTCGCTTAGAAGAAGACAAGCGAAAGGAATCAATTGTAGCTTACCTTTTGCATCTCATGAGGAAGTATTCTAAGTTATTTAGAACTGAGTTGTCAGATGACACTGACTCACAGGGTGGATCAACTCCTTGTTCTCCTACTGTTCGGTGTTCTCTTGAGGACAATGGACCTACAGCCAATGGTCGAGTGTTTGAACATCAGCTCTCAAAGCTCAGTTCTTTCAATTTCAAGCCAAATTATAGGATATCAGGGCAAATGCCTCTTCCACCTGAGGAATTGAGGTGTCCAATATCATTGCAGCTTATGTACGACCCTGTCATAATTGATTCCGGGCAAACATATGAAAGGATCTGCATAGAGAAATGGTTCAGTGATGGTCACAAAATCTGCCCGAAGACTCAACATTGGCTCTCCCATCTGTCCTTGACACCTAATTACTCTGTCAAAGGTCTTACTGCTAACTGGTGTGAATCTAACGGAGTTCCTATCCCTGATGGTCCACCAAAGTCGCTTGATCTGAATTATTGGAGGCTTGCTCTGTCTGATTCCGAGTCTGGACAATCAAGATCTGTGGACAAAGTTGGCTCTTGCATGTTGAAGGAAGTTAAGATAGTTCCTTTGGAGGAAAGTGGAACAATAAAGGTTGTTGAAGAAAATGAAGCAGATGATAATACATACATGGAGGAATCATCTGATTTTATTACACTGGAGAGTTGTGTAAATTTTATGACAGTATTGACCGAAGAGGGAGACATGAGAAAAAAATGCAAGGCTGTGGAGCAGATAAGACTTCTACTGAAGGATGATGATGAAGCTCGAATTTTGATGGGAGCCAATGGCTTTCCTGAAGCACTCATGGAATTCCTAACTTTAGCTCTAATTGAAGAAAACGCTGATGCTCAGGAAATTGGAGCCATGGCTCTCTTCAATCTTTCTGTCAACAACAACAGAAACAGGGAAATGATGATAGCAGCAGGTGTAATCTCGTTGTTGGAGAACATGATTTTGAAATCCAATTTACATGGACCTGCAACAGCCCTATATTTGAATCTTTCCTGCCTAGAAGATGCCAAACCTATCATTGGCTCCAGTAGAGCTGTTCTTTTCCTTATCCAGCTGCTTACTTCTGATGGTGAATCCCAAATGAAGCTCGATGCACTTCACACCCTTTACAACCTCTCGACCACGCCCTCCATTGTCCCCGTTCTTCTTTCCTCCGGCATCATTGATGGACTTCAATCCTTTTTTGCAACTCCCGGTGACAACTTATGGACTGAGACTTCCTTAGCTGTCTTATTAAACTTAGCTTCAAGCCAGTTGGGGATAGAAGAAATAACCTCAGCCCCGGAGCTTATCAGCGGGTTGGCAGCAATCGTGGATGCTGGCGAACGTGCCGAGCAGGAGCAAGCTGTCTCGTGTTTGTTGCTTTTGTGTAGAGGGAGTGAAAAATGCAGTCAAATGGTGTTACAGGAAGGAGTGATTCCTGGATTGGTGGCGATTACGGTAAACGGGACTTCGAGAGGTAAAATAAAAGCTCAGAAGCTTCTGATGTTGTTTAGGGAGCAGAGGCAAAAGGATACCGATCTCGGCCAGCAGCGAGAACGAGATGGAAATAGCAATGCAACCATGGCTGTTCCAGAGCCAAAAACTCTATGCAAATCAGTATCAAAGAAAAAGATGGGGAAAGCATTAAGCTTTTTTGGGAAGAACAAACGATTTTCACTATACCAATGTTGA 2310 42.68 MDVPDVEEILFSPTDAKLHGEMYKKLAAIYCQVMSIFPSLEAARPRSKTGIQALCSLHVALEKAKNTLRHCSESSKLYLAITGDAVLAKFEKARCSLEVSLVCVEDIVSESIGFQIQQIVDELKNIVFLLDPLEKQVGDDIIALLLQERKFDDSNGHNELEHFHQAATKLGITSSKAALTERRALKRLVERARLEEDKRKESIVAYLLHLMRKYSKLFRTELSDDTDSQGGSTPCSPTVRCSLEDNGPTANGRVFEHQLSKLSSFNFKPNYRISGQMPLPPEELRCPISLQLMYDPVIIDSGQTYERICIEKWFSDGHKICPKTQHWLSHLSLTPNYSVKGLTANWCESNGVPIPDGPPKSLDLNYWRLALSDSESGQSRSVDKVGSCMLKEVKIVPLEESGTIKVVEENEADDNTYMEESSDFITLESCVNFMTVLTEEGDMRKKCKAVEQIRLLLKDDDEARILMGANGFPEALMEFLTLALIEENADAQEIGAMALFNLSVNNNRNREMMIAAGVISLLENMILKSNLHGPATALYLNLSCLEDAKPIIGSSRAVLFLIQLLTSDGESQMKLDALHTLYNLSTTPSIVPVLLSSGIIDGLQSFFATPGDNLWTETSLAVLLNLASSQLGIEEITSAPELISGLAAIVDAGERAEQEQAVSCLLLLCRGSEKCSQMVLQEGVIPGLVAITVNGTSRGKIKAQKLLMLFREQRQKDTDLGQQRERDGNSNATMAVPEPKTLCKSVSKKKMGKALSFFGKNKRFSLYQC 769
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6460697 6464991 + CmaCh18G007100.1 Cma18g00710 314048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00710 769 SUPERFAMILY ARM repeat 433 697 IPR016024 -
Cma18g00710 769 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Cma18g00710 769 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Cma18g00710 769 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Cma18g00710 769 Gene3D - 614 724 IPR011989 -
Cma18g00710 769 Gene3D - 417 613 IPR011989 -
Cma18g00710 769 SMART arm_5 545 586 IPR000225 GO:0005515
Cma18g00710 769 SMART arm_5 460 504 IPR000225 GO:0005515
Cma18g00710 769 SMART arm_5 506 544 IPR000225 GO:0005515
Cma18g00710 769 CDD RING-Ubox_PUB 284 325 IPR045210 -
Cma18g00710 769 PANTHER U BOX DOMAIN-CONTAINING 1 721 - -
Cma18g00710 769 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 1 721 - -
Cma18g00710 769 SUPERFAMILY RING/U-box 274 356 - -
Cma18g00710 769 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01823 Cma18g00710 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma16g00618 Cma-Chr16:3193789 Cma18g00710 Cma-Chr18:6460697 1.62E-69 dispersed
Cma18g00404 Cma-Chr18:2212447 Cma18g00710 Cma-Chr18:6460697 2.42E-13 dispersed
Cma18g00710 Cma-Chr18:6460697 Cma01g00596 Cma-Chr1:3130763 5.31E-51 dispersed
Cma12g00066 Cma-Chr12:239998 Cma18g00710 Cma-Chr18:6460697 0 wgd
Cma18g00710 Cma-Chr18:6460697 Cma04g01823 Cma-Chr4:9191434 0 wgd
Cma18g00710 Cma-Chr18:6460697 Cma05g00083 Cma-Chr5:352529 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00710 - - csv:101210079 1346.26