Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00711 ATGCGAACGCCGGAAAATTCCATTGCTCAGTTTCAAAAAATCCGCATAGCTGGTGATGGAAGATGTTTGTTTCGATCAGTGGTTCACGGTGCTTGTCTCAGATCGGGCAAGCCAGCTCCAAACGAGGATCTCGAAAAAGAGCTTGCAGACGAGCTTAGAGAGAACGTTGCAAATGAGTTGATGAAGAGGCGATTGGACACCGAGCGGTTTATTGAAGGTGATTTTGGCCAGTATGTTAGATGCATGCGCCAACCACACGTTTGGGGAGGAGAGCCTGAGTTACTTATGTCTTCACACGTCCTACGGATGCCAATCTCGGTCTACATTTGGGACATGAAGTCAGCAAATCTGAAGCTCATAGCTGAGTATGGGCAGGAGTACAGTAAAGAGAATCCTATTCGCGTCCTTTTTCACAGCTACGGACATTATGATTTACTGAAGGCTCCATGCAATTAA 456 46.49 MRTPENSIAQFQKIRIAGDGRCLFRSVVHGACLRSGKPAPNEDLEKELADELRENVANELMKRRLDTERFIEGDFGQYVRCMRQPHVWGGEPELLMSSHVLRMPISVYIWDMKSANLKLIAEYGQEYSKENPIRVLFHSYGHYDLLKAPCN 151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6466272 6469715 + CmaCh18G007110.1 Cma18g00711 314049

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00711 151 Coils Coil 41 61 - -
Cma18g00711 151 ProSiteProfiles OTU domain profile. 11 149 IPR003323 -
Cma18g00711 151 SUPERFAMILY Cysteine proteinases 13 147 IPR038765 -
Cma18g00711 151 PANTHER OTU DOMAIN CONTAINING PROTEIN 9 150 - -
Cma18g00711 151 Pfam OTU-like cysteine protease 18 143 IPR003323 -
Cma18g00711 151 Gene3D - 4 151 - -
Cma18g00711 151 PANTHER OS01G0900900 PROTEIN 9 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00711 K18342 OTUD6; OTU domain-containing protein 6 [EC:3.4.19.12] - csv:101209836 259.225
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00711 Cma-Chr18:6466272 Cma18g00929 Cma-Chr18:7962624 1.77E-46 dispersed
Cma18g00711 Cma-Chr18:6466272 Cma14g00437 Cma-Chr14:2057115 4.69E-64 transposed
Cma18g00711 Cma-Chr18:6466272 Cma06g00085 Cma-Chr6:472717 1.81E-64 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1176 . . . . . . . . . Cmo18g00699 . Cma18g00711 . Car18g00656 . Cpe09g00578 . Bhi07g01897 . . . Hepe10g1531 . . . . . . . . . . . Cone8ag0739 . Lsi04g00664 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cla11g01356 . Cec11g1440 . Clacu11g1571 Cmu11g1391 Cre11g1812 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000657 2 7 1 4 3 2 4 2 3 3 3 3 3 3 3 4 3 4 4 3 3 3 2 2 2 3 2 8 5 3 97
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00711 Cma_Chr18 FPKM 3.434988 4.919466 12.151292 12.093317 3.286298 3.927628 3.601561 1.497731 2.235806 2.730674