Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00712 ATGGATTTTATTTTGTTCAATCTTGTTGTAGTGACGAAGAACATCATGAAATTGAGTCCGAGAGAAGTGGAAAAGCTAGGTCTACATAATGCGGGATTTCTAGCGCAGAAGCGTCTTGCTCGTGGCGTGAGATTGAATTACGCTGAAGCTGTAGCGCTAATTTCCGCACAGATTTTGGAGTTTGTTCGTAATGGCGAGAAGAGCGTGGCGGATCTGATGGATTTGGGGAAAACACTGTTAGGAAGGAGATTAGTTCTTCCTGGTGTTCCGCATCTTTTGGATTACGTTCAGGTTGAAGGAACTTTTCCTGATGGGACTAAGTTAATTACTGTTCATAATCCTATTGAATCAGAAGATGGGAATCTGGAGCTAGCGTTGCAGGGCTCTTTTCTTCCAGTTCCTTCGTTGGAAAGTAGCACAGTGCCTGGCGAGATTATCTGTGTTGATGATGAGATTGCAATCAATGTTGGGCGGAAAGCTGTTTTAGTCAAGATAAACAATAAGGGAGACAGATCAATTCAGGAGCAAAAGTCTGCCACCCTTGTAGCTATTGGTGATACCATTGCAGCTTTTAAAGGAAGAACTATACACACATACCATAGTGAAGAAGCTGGAGGTGGTCATGCTCCAGATATCATTCTGAGTGTGTAG 651 43.01 MDFILFNLVVVTKNIMKLSPREVEKLGLHNAGFLAQKRLARGVRLNYAEAVALISAQILEFVRNGEKSVADLMDLGKTLLGRRLVLPGVPHLLDYVQVEGTFPDGTKLITVHNPIESEDGNLELALQGSFLPVPSLESSTVPGEIICVDDEIAINVGRKAVLVKINNKGDRSIQEQKSATLVAIGDTIAAFKGRTIHTYHSEEAGGGHAPDIILSV 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6470561 6474466 + CmaCh18G007120.1 Cma18g00712 314050

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00712 216 PANTHER UREASE 184 213 - -
Cma18g00712 216 PANTHER UREASE 16 174 - -
Cma18g00712 216 SUPERFAMILY Urease, gamma-subunit 16 120 IPR036463 GO:0016151|GO:0043419
Cma18g00712 216 Gene3D - 163 216 - -
Cma18g00712 216 SUPERFAMILY Metallo-dependent hydrolases 184 214 IPR032466 -
Cma18g00712 216 CDD Urease_gamma 19 115 IPR002026 GO:0016151|GO:0043419
Cma18g00712 216 Pfam Urease, gamma subunit 16 115 IPR002026 GO:0016151|GO:0043419
Cma18g00712 216 ProSiteProfiles Urease domain profile. 186 216 IPR017951 GO:0006807|GO:0009039|GO:0016151
Cma18g00712 216 Gene3D - 19 138 IPR036463 GO:0016151|GO:0043419
Cma18g00712 216 TIGRFAM urease_gam: urease, gamma subunit 16 117 IPR002026 GO:0016151|GO:0043419
Cma18g00712 216 SUPERFAMILY Urease, beta-subunit 141 174 IPR036461 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00712 K01427 URE; urease [EC:3.5.1.5] - cmax:111466534 357.451
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01821 Cma18g00712 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00712 Cma-Chr18:6470561 Cma04g01821 Cma-Chr4:9179924 3.00E-10 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1171 . . . . . Bpe10g00784 . . Cmo04g01918 Cmo18g00700 . Cma18g00712 . Car18g00657 Sed06g0143 Cpe09g00577 Cpe01g01606 Bhi07g01896 Tan04g0084 Cmetu10g0294 Lac13g0072 . . . . . . . . . . . . . . Lsi04g00663 . . Cme10g00641 Blo06g00828 . . . . . . . . . . Cma04g01821 . Car04g01834 . . . . . . . . . . Cla11g01357 . Cec11g1442 Cco11g1438 Clacu11g1572 Cmu11g1392 Cre11g1813 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0028507 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 2
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00712 Cma_Chr18 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0