Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00715 ATGGCAGCGGGGAGGATGGGGGGTTATCGCGACTATGATATGAAGGACCGAGATTCCGGTTTTGATGTGAGTGCGAAGGAAGAGTATGAACGGGGGCGGGGGCGTAACCGTGAAAGCAATAAGAGTCGAGGTTGGGATGCTAGGGATAGAATTAGGGTCAGGCCGAAGGAGATCAAGGAGAGGGAATTAGGTAATGGTAGTGTACGTTCTTCAAGTAGAAGCGACTCTGGCAGCAGCGGTGGGCCTCATGGAATCAATCAAAGTGTTTTTCTTGTCAGGGCAATGGATAGGGAGCCGGGTGAGTTATCCAGTGAGAGTGGATCTGATGATGCCACCGATTCTGGATTGCAATTTAAGAATAGCGAGGCAGCAAAGGTGGCGGAGAATGGAATTCGTTCTCCATCTGAGAAGAAGAGAAAGTTCTCACCGATAGTTTGGGACAGAGACGTTAAGGAAGAGACTGTTTCCCTAAGAAATAAGGTCGCCAAGGCTGTGACAGATTCATCTCTGCCGCTTCCTAAGGAGCAGCGGCAATCTCCTAATGTGGTATTGGATACTCTTGATACCGTACCCACTGTCAGAACTATTGATCACGAGTATGTGCAACCTTCTTCACTTGCTGAATCTTCTGTTGCTCTTGGATCAGATGAGTTTTCCGATAGTGGTTCACCAATGATGCCATCTTCTGCTTCAATTAGGAAACCATTGGAGAGTGATCTTGAAGCAGAAAATCTTGGGGATGATGATTATGTCCCCACAAGAGGCATTTCATCCTCTAGATGGGCTGCTGGAAATAACTCTCCCGGTGATGAAGGTGAGATTTTAGACAAGGAAATTCCTAAAAGGAGGAAGACAACACCAATTTCTGAGTCCTTGGAGGGCATTCGACTTCAAAGGAAATCATTAACTCCAGAGATTGGGGAGGTGATGAGACATGGCTCTGAAGCAGGGACAAGATCATCTGAATCGACAGAACATGGTGATCGGTCTCGATCATCTAGTGGGAATCATTACCATGGTAATGATTTTGAGAAGTTTGAAGGCACAGAGCTAGGTGATGAAATTCATAGATCAGATACTAGCAGTAGCCGGTTAGATAATGATTCTGAGGATGAGACAGAATCTCCCGAGGAGGCAGAGCTCAGTGGCCCTCCCCCCCGAAATGTAAATATGCTTCAGGGCTGTAGAAGTGTTGATGAATTTGAAAGATTGAACAAGATTGATGAAGGAACTTACGGTGTTGTATATAGAGCCAAAGACAAAAAGTCAGGGGAAATAGTTGCGTTGAAGAAAGTAAAAATGGAAAAGGAGCGAGAAGGTTTTCCAATGACTTCTTTGAGAGAAATAAACATTCTCCTTTCTTTTCATCACCCTTCAATTGTTGATGTAAAAGAAGTGGTGGTGGGCAGTAGCCTTGATAGCATTTTTATGGTAATGGAATACATGGAGCATGATCTAAAAGCACTAATGGAGACAATGAAGCAGCCATTTAGTCAAAGTGAAGTCAAATGTCTGATGCTACAGTTATTGGAGGGTGTTAAATATCTTCATGATAATTGGGTGCTTCATAGGGACTTAAAAACATCAAATTTACTCTTGAATAATCAGGGAGAGTTGAAGATCTGTGATTTTGGATTAGCTCGACAGTATGGGAGCCCTTTGAAAACATATACGCATTTGGTTGTTACTCTTTGGTACAGGGCACCTGAGCTTCTTTTGGGAACAAGACAGTATTCGACAGCCATTGATATGTGGTCATTGGGTTGTATTATGGCTGAATTATTATCAAAGCAACCACTGTTTAATGGAAAAACAGAAGTTGATCAACTTGACAAGATATTCCGAATGCTAGGCACACCAAATGAAACAATTTGGCCTGGATTTTCCAATCTTCCAGGAGTTCGGGTCAACTTTGTTAAGCACCAGTACAACTTACTGCGTAAGAAATTTCCTGCAACATCATTCACGGGTTCGCCAGTTCTTTCTGATTCAGGATTTGATTTGTTGAACAAACTACTAACTTATGATCCTGAGAAGAGAATTACAGCTGAGGCCGCTCTTAATCACGAATGGTTCTCAGAAGTTCCTCTTCCAAAGTCTAAAGCATTCATGCCTACTTTTCCTGCTCAGCATGCTCAGGACAGGCGTTTCCGGAGAGTAATGAAGAGTCCAGACCCCTTAGAAGAGCAGCGCAGAAAGGAGTTGCAGCAAGGAGAATTGGGAACATCTGGCTTGTTTGGCTGA 2244 43.63 MAAGRMGGYRDYDMKDRDSGFDVSAKEEYERGRGRNRESNKSRGWDARDRIRVRPKEIKERELGNGSVRSSSRSDSGSSGGPHGINQSVFLVRAMDREPGELSSESGSDDATDSGLQFKNSEAAKVAENGIRSPSEKKRKFSPIVWDRDVKEETVSLRNKVAKAVTDSSLPLPKEQRQSPNVVLDTLDTVPTVRTIDHEYVQPSSLAESSVALGSDEFSDSGSPMMPSSASIRKPLESDLEAENLGDDDYVPTRGISSSRWAAGNNSPGDEGEILDKEIPKRRKTTPISESLEGIRLQRKSLTPEIGEVMRHGSEAGTRSSESTEHGDRSRSSSGNHYHGNDFEKFEGTELGDEIHRSDTSSSRLDNDSEDETESPEEAELSGPPPRNVNMLQGCRSVDEFERLNKIDEGTYGVVYRAKDKKSGEIVALKKVKMEKEREGFPMTSLREINILLSFHHPSIVDVKEVVVGSSLDSIFMVMEYMEHDLKALMETMKQPFSQSEVKCLMLQLLEGVKYLHDNWVLHRDLKTSNLLLNNQGELKICDFGLARQYGSPLKTYTHLVVTLWYRAPELLLGTRQYSTAIDMWSLGCIMAELLSKQPLFNGKTEVDQLDKIFRMLGTPNETIWPGFSNLPGVRVNFVKHQYNLLRKKFPATSFTGSPVLSDSGFDLLNKLLTYDPEKRITAEAALNHEWFSEVPLPKSKAFMPTFPAQHAQDRRFRRVMKSPDPLEEQRRKELQQGELGTSGLFG 747
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6477536 6480390 - CmaCh18G007150.1 Cma18g00715 314053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00715 747 MobiDBLite consensus disorder prediction 318 369 - -
Cma18g00715 747 MobiDBLite consensus disorder prediction 201 228 - -
Cma18g00715 747 SMART serkin_6 401 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00715 747 ProSiteProfiles Protein kinase domain profile. 401 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00715 747 Pfam Protein kinase domain 401 692 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00715 747 MobiDBLite consensus disorder prediction 271 289 - -
Cma18g00715 747 SUPERFAMILY Protein kinase-like (PK-like) 393 698 IPR011009 -
Cma18g00715 747 MobiDBLite consensus disorder prediction 67 85 - -
Cma18g00715 747 PANTHER CYCLIN-DEPENDENT KINASE G-2-LIKE 155 747 - -
Cma18g00715 747 ProSitePatterns Serine/Threonine protein kinases active-site signature. 521 533 IPR008271 GO:0004672|GO:0006468
Cma18g00715 747 Gene3D Transferase(Phosphotransferase) domain 1 484 722 - -
Cma18g00715 747 Gene3D Phosphorylase Kinase; domain 1 387 483 - -
Cma18g00715 747 MobiDBLite consensus disorder prediction 1 141 - -
Cma18g00715 747 MobiDBLite consensus disorder prediction 201 390 - -
Cma18g00715 747 MobiDBLite consensus disorder prediction 723 747 - -
Cma18g00715 747 MobiDBLite consensus disorder prediction 105 119 - -
Cma18g00715 747 PANTHER CELL DIVISION PROTEIN KINASE 155 747 - -
Cma18g00715 747 MobiDBLite consensus disorder prediction 9 66 - -
Cma18g00715 747 CDD STKc_CDC2L1 395 692 IPR045267 GO:0004674|GO:0005524|GO:0006468
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00715 K08818 CDC2L; cell division cycle 2-like [EC:2.7.11.22] - csv:101209096 1259.97
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01287 Cma-Chr7:7258343 Cma18g00715 Cma-Chr18:6477536 3.61E-79 dispersed
Cma10g00319 Cma-Chr10:1447108 Cma18g00715 Cma-Chr18:6477536 3.44E-44 dispersed
Cma18g00715 Cma-Chr18:6477536 Cma20g00021 Cma-Chr20:74064 1.71E-91 dispersed
Cma18g00715 Cma-Chr18:6477536 Cma04g01819 Cma-Chr4:9164549 0 wgd
Cma18g00715 Cma-Chr18:6477536 Cma05g00076 Cma-Chr5:321607 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1152 . . Bda01g02188 . . . . . . Cmo18g00702 . Cma18g00715 . Car18g00660 . Cpe09g00576 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bma01g00022 . . . . . . . . . . . . . . . . . Cla11g01359 Cam11g1415 Cec11g1444 Cco11g1440 Clacu11g1574 Cmu11g1394 Cre11g1815 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000852 1 16 2 1 1 1 3 2 2 2 2 2 3 2 2 3 2 2 3 2 2 2 2 2 1 2 2 3 2 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69299 PF00069 Pkinase 6.80E-76 CL0016 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00715 Cma_Chr18 FPKM 16.562834 16.186909 20.577934 21.988171 20.091236 18.926579 20.00585 29.906244 25.887207 28.751564