Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00724 ATGCAAATCAGTGATAAAAATCAGTGGGTTTTGTTCATTTTCTTTGATCTTCAAATGGGGTTTCCTCGTTTTTTGGTTTTGATTCTTCTCGTCGTTTCTTCAGTCGATTGTCAGGTTAAAGAGTTCATCAGTATAGACTGTGGTGGCTCCAAGAACTACACCGACCCAGTTACAGGTCTAGCATGGATATCCGACGCCGGAGTCATGGCTGCCGGTGGCTCATCGCTGGTGGAAAACCCACATGGGAACTTGATGCAGTATGGAACACGGCGGGATTTTCCGATCGACGACAAGAAATACTGCTATACTTTGGAAACAGAGGAGAGGAGAAGGTATTTGGTTCGTGCAACTTTTCAGTATGGGAGTTTGAAGAATGAAGAAACTTACCCTAAATTTGAGCTTTATTTGGATGCAACTAAGTGGTCGACTGTTACTATTTTTGATGCTTCGAGGGTTTATGTGAAGGAGATGATCATTAGAGCACCTTCAAGTTCATTTGATGTGTGCATATGCTGTGCTACTACTGGCTATCCGTTCATATCAACTCTTGAGCTACGCCCTTTTAACCTCTCGATGTATGCTACTGATTTTGAAGATGATTTCTTCTTGGAAGTAGCTGCTAGAGTGAACTTTGGTGCTTTGAGCAAGGATGTGATTAGGTACCCAGATGATCCATATGACAGGATTTGGGATTCAGATCTTGAAAAGAGGCAAAATTATCTTGTGGGAGTAGCTCCTGGGACAGAGAGAATCAGTACTATGAACAACATTAATGTAATGACAAGAGAATATCCGCCTGTTAAGGTGATGCAAACAGCAGTTCTTGGCACCAAGGGAGTGCTCAGCTACAGGTTGAACTTGGATGATTTTCCTGCCAATGCCAGAGCTTATGCATATTTTGCTGAAATAGAAGAATTGGGTCAGAATGAGACTCGGAAGTTCAAATTGGAGGAACCGAACATTCCCGACTCGAGTAATGCAGTGGTGAATATTGCTGAGAATGCCAATGGGACCTATACTCTTTATGAACCGAGTTATATGAATGTCTCTCTGAGTTTTGTGCTTTCGTTTTCCTTCGTCAAGACTCGAGATTCAACACGAGGACCGCTTTTGAATGCATTGGAAATTAGTAGATATGTCGGGATTGATGCCAAGACCGATGGGCGAGATGAGGCTGTTGTAAATGCCTTGCGTACCATGTCAGCGGAGAGCGTTCAGACAAATCAAGGCGATCCTTGTGTTCCAACGAGTTGGGAATGGGTGACATGTACTGCCACGAAACCGCCGAGAATATCGAAAGTTGAGCTCTCCAGAAAGAATGTCAAGGGCGATATTCCTCCCGAGATCAATACTATGGACGGATTAACGGAATTGTGGTTAGATGATAATTTCCTTGCAGGATCACTGCCCGACATGAGTAATCTAGTAAATTTGAAGATTTTACATCTAGAGAACAACAAATTGACAGGGACATTGCCTTCTTACCTGGGTACTTTGCCCAACTTACAGGAACTATATATTCAAAACAACGCTTTCTCGGGCGAAATACCGTCGGAGTTATTGGCAAAGAAACTCGTGTTTAAGTATGACGGTAACCTCGGGCTGCATGCAAGTAAACGATACAACATGCATTCTAAAGTTATAATAGGAGTTTCATTGGGAGTGCTTGTACTTCTGATACTTCTACTTGTAGGAAGTTTTCTGTTACTCCACAAGCTTCGAAGACAGACGACGCCTTATCATAAAAAAGGCGGTTCTCTAAAAGCCAGCACCAAACGCTCTTCTGGCTACTCGATCGGCAAGGGAGACGAAGGCATTGCCTACTACTTATCTCTCGCCGAGCTGGAAGAAGCAACTAATAACTTTTCTAAGAAAGTCGGTAAAGGCAGCTTCGGATCAGTCTATTACGGGAAGATGGCGGATGGAAAAGAAGTAGCGGTTAAAATCATGGCGGAGTCATCGGCACACGGGAATCAGCAGTTTACGACCGAGGTTGCCTTATTATCACGAATCCATCACCGAAATTTGGTCCCTTTGATCGGGTACTGTGAAGAAGAGCATCAACGGATTCTCGTTTATGAATATATGCATAATGGAACATTACGAGATCACTTATATGGTAGTACCGATCCGAAGCACTTGGACTGGCTGCCTCGTCTGCACATTGCTGAAGATGCAGCTAAAGGGCTCGAGTATTTGCACACGGGATGCAGTCCAAGTATCATCCATCGAGATGTAAAGACGAGCAACATCCTCCTCGACATCAATATGAGAGCGAAAGTTTCCGACTTTGGCCTCTCGAGGCAAGCTGAGGAAGACTTGACCCATGTCTCGAGCGTCGCTCGAGGAACAGTAGGCTACCTGGATCCTGAGTACTACGCTAGTCAACAACTGACTGAAAAGAGCGACGTGTATAGTTTTGGAGTCGTTTTGCTCGAACTGATCTCCGGGAAGAAACCCGTCTCACCGGAGGACTATGGCAGTGAATTGAATATCGTTCATTGGGCGAGGTCGTTGGTCCATAAAGGGGACGTGACAAGCATCATCGATCCATTTCTAAACGGAAAAGTCAAAATAGAATCGGTATGGAGAATCGCCGAAGTCGCCATTCAGTGTGTGCAGCAGCATGGAGTTTCCAGGCCAAGGATGCAGGAAGTCATAGTGGCCATACAAGATGCAATCAAGATTGAACAAGGCATTGAAGGAAACCAGAAACTATCTTCAGGCAGTTCAAGAACACAATCATGTCGAAAAACGTTGCTGACGACGTTTCTTGAGATCGAGAGCCCCGACGGTTCGCTGCTTCCCTCTGCAAGATAA 2820 44.65 MQISDKNQWVLFIFFDLQMGFPRFLVLILLVVSSVDCQVKEFISIDCGGSKNYTDPVTGLAWISDAGVMAAGGSSLVENPHGNLMQYGTRRDFPIDDKKYCYTLETEERRRYLVRATFQYGSLKNEETYPKFELYLDATKWSTVTIFDASRVYVKEMIIRAPSSSFDVCICCATTGYPFISTLELRPFNLSMYATDFEDDFFLEVAARVNFGALSKDVIRYPDDPYDRIWDSDLEKRQNYLVGVAPGTERISTMNNINVMTREYPPVKVMQTAVLGTKGVLSYRLNLDDFPANARAYAYFAEIEELGQNETRKFKLEEPNIPDSSNAVVNIAENANGTYTLYEPSYMNVSLSFVLSFSFVKTRDSTRGPLLNALEISRYVGIDAKTDGRDEAVVNALRTMSAESVQTNQGDPCVPTSWEWVTCTATKPPRISKVELSRKNVKGDIPPEINTMDGLTELWLDDNFLAGSLPDMSNLVNLKILHLENNKLTGTLPSYLGTLPNLQELYIQNNAFSGEIPSELLAKKLVFKYDGNLGLHASKRYNMHSKVIIGVSLGVLVLLILLLVGSFLLLHKLRRQTTPYHKKGGSLKASTKRSSGYSIGKGDEGIAYYLSLAELEEATNNFSKKVGKGSFGSVYYGKMADGKEVAVKIMAESSAHGNQQFTTEVALLSRIHHRNLVPLIGYCEEEHQRILVYEYMHNGTLRDHLYGSTDPKHLDWLPRLHIAEDAAKGLEYLHTGCSPSIIHRDVKTSNILLDINMRAKVSDFGLSRQAEEDLTHVSSVARGTVGYLDPEYYASQQLTEKSDVYSFGVVLLELISGKKPVSPEDYGSELNIVHWARSLVHKGDVTSIIDPFLNGKVKIESVWRIAEVAIQCVQQHGVSRPRMQEVIVAIQDAIKIEQGIEGNQKLSSGSSRTQSCRKTLLTTFLEIESPDGSLLPSAR 939
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6549239 6556776 + CmaCh18G007240.1 Cma18g00724 314062
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00724 939 SMART serkin_6 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00724 939 Pfam Leucine Rich repeats (2 copies) 477 516 IPR025875 -
Cma18g00724 939 Pfam Protein tyrosine and serine/threonine kinase 622 887 IPR001245 GO:0004672|GO:0006468
Cma18g00724 939 ProSitePatterns Serine/Threonine protein kinases active-site signature. 741 753 IPR008271 GO:0004672|GO:0006468
Cma18g00724 939 PANTHER - 32 907 - -
Cma18g00724 939 ProSiteProfiles Protein kinase domain profile. 620 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00724 939 Gene3D Transferase(Phosphotransferase) domain 1 696 910 - -
Cma18g00724 939 ProSitePatterns Protein kinases ATP-binding region signature. 626 648 IPR017441 GO:0005524
Cma18g00724 939 Gene3D Ribonuclease Inhibitor 392 532 IPR032675 -
Cma18g00724 939 CDD STKc_IRAK 626 887 - -
Cma18g00724 939 PANTHER OS07G0107800 PROTEIN-RELATED 32 907 - -
Cma18g00724 939 SUPERFAMILY Protein kinase-like (PK-like) 605 887 IPR011009 -
Cma18g00724 939 Gene3D Phosphorylase Kinase; domain 1 597 695 - -
Cma18g00724 939 Pfam Malectin-like domain 45 377 IPR024788 -
Cma18g00724 939 SUPERFAMILY L domain-like 413 520 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01805 Cma18g00724 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma06g00349 Cma-Chr6:1616971 Cma18g00724 Cma-Chr18:6549239 0 dispersed
Cma08g00213 Cma-Chr8:1193387 Cma18g00724 Cma-Chr18:6549239 2.67E-131 dispersed
Cma08g01159 Cma-Chr8:7133693 Cma18g00724 Cma-Chr18:6549239 1.64E-48 dispersed
Cma14g00188 Cma-Chr14:792274 Cma18g00724 Cma-Chr18:6549239 0 dispersed
Cma18g00724 Cma-Chr18:6549239 Cma01g00085 Cma-Chr1:386258 1.17E-126 dispersed
Cma19g00607 Cma-Chr19:6641186 Cma18g00724 Cma-Chr18:6549239 8.59E-50 dispersed
Cma18g00724 Cma-Chr18:6549239 Cma04g01805 Cma-Chr4:9099762 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69300 PF12819 Malectin_like 7.20E-86 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00724 - - csv:101207149 1630.15