Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00725 ATGCTTCTCTGTCCACAGAGAAGACAAAACGGAATTTCTCGGATTATGTATTATCAGCTCGAGAAATTCTCTCATCACGATTCTTTACAAGTTTTGGAAGCCGATATTCAATATGCAAATTCTCTGGCGGCGGCGATCCCCATGGCGAAAGGAGGTGCCTATCTTCAAATGAAATTGGTTTATAATCATTTAGCTCCCATTGTTTTGTTCTTGCTTCACTGGATGGATTGTTCTTGCTCATGCTTGTTTCCCAGATATTTAAGCCTCTTCCACATACTTGTGTACAAGGTATATCCAGAGGGAAAACAAAAACGAAGTATATCTAGACATGGAAGGAAGGCAACCATTAGGGAATTCTATGCTATAATATTGCCATCACTTCAGCGAATCCACAGTAGCTCGGATAAGCTGGATGATTGCAAGGAAGAGTGCCATTGGATTGAGATGCCGAGCAAGAAGAGAGGCGATAAAGATGTTAGACTCACGAATGTCGATATGAAGCGAGAAGACGAGTGTGGTATTTGCTTGGAGCCGTGCACCAAGATGGTTTTGCCAAATTGTTGTCATGCAATGTGCATCAAATGCTATCGAAATTGGAACACGAGGTCGGAGTCCTGCCCGTTTTGTCGTGGCAGCTTGAAGAGAGTTAACTCAGAGGACTTATGGGTGCTCACGTGTAGTGATGATGTGGTTGATGCCGAAACCGTTTCGAAGGAGGATACGTTGCGCTTCCATCGCTATATAAACAGCTTGCCAAAAGACTATCCAGACGCGCTGTTCGTAGTATATTCTGAATATCTATTCTAG 807 43.25 MLLCPQRRQNGISRIMYYQLEKFSHHDSLQVLEADIQYANSLAAAIPMAKGGAYLQMKLVYNHLAPIVLFLLHWMDCSCSCLFPRYLSLFHILVYKVYPEGKQKRSISRHGRKATIREFYAIILPSLQRIHSSSDKLDDCKEECHWIEMPSKKRGDKDVRLTNVDMKREDECGICLEPCTKMVLPNCCHAMCIKCYRNWNTRSESCPFCRGSLKRVNSEDLWVLTCSDDVVDAETVSKEDTLRFHRYINSLPKDYPDALFVVYSEYLF 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6558630 6560651 + CmaCh18G007250.1 Cma18g00725 314063

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00725 268 SMART ring_2 172 209 IPR001841 -
Cma18g00725 268 SUPERFAMILY RING/U-box 162 215 - -
Cma18g00725 268 Pfam Ring finger domain 170 210 IPR001841 -
Cma18g00725 268 ProSitePatterns Zinc finger RING-type signature. 187 196 IPR017907 -
Cma18g00725 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 220 IPR013083 -
Cma18g00725 268 PANTHER F21J9.10 19 267 - -
Cma18g00725 268 ProSiteProfiles Zinc finger RING-type profile. 172 210 IPR001841 -
Cma18g00725 268 PANTHER RING FINGER PROTEIN 41, 151 19 267 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00725 - - - cpep:111802419 524.628
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma12g00051 Cma-Chr12:193081 Cma18g00725 Cma-Chr18:6558630 1.53E-120 dispersed
Cma18g00725 Cma-Chr18:6558630 Cma05g00062 Cma-Chr5:249279 1.54E-103 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1116 . . . . . Bpe10g00772 Bma14g01876 . . Cmo18g00712 . Cma18g00725 . Car18g00672 . Cpe09g00564 Cpe01g01588 Bhi07g01852 . . . . . . . . . . . . . . . . . Lsi04g00641 . . Cme10g00618 . . . . . . . . . . . . . Car04g01817 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001225 3 4 0 0 3 1 3 3 3 3 1 2 2 2 3 2 1 2 4 2 3 3 3 3 3 2 3 4 6 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00725 Cma_Chr18 FPKM 22.937002 25.374155 15.906248 14.76163 15.789938 15.440331 16.103233 17.867388 16.685009 15.996376