Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00726 ATGTCTGAGAATCATGATCCAGAGCAGGCGCTGCTGAGTTCAGGAACTGGAGCTGAAGATGGAAATAATGGGGTGGAAATTGTGGAAATTACGGTTAATGATGGTGTTGTGGAGTCATCCTCTGAGACGTCCGCGGACATTGTTTCGGAGAATGACTCTGTTTTGCAGTCCTCTGAGATATCCAGTGGATTTGTCCCGTCCGAACCGAACCAGGGATCGGCGATATCACCAGAGGTTCCTCGAACCGAAGGTGCAGAGAACTTGCCACAAGATGACTCTGATGATATTGTAATAGTCGAAGATGTTGGAAAAGAAGATATGTTTGTGGACTGCCCGGACGAGTTGGTTGGCAATGCTGATATCAGAGAAGCAGTAGCAGCTGCTGAAACTCAAGGTAGTTCGACGGAGGAAGTGCCTTCTGATACGCAGGAATTACAGTATGAGGTAGAAAAAGTTTCTTTAATTCACGAGGTCGAAAATACGAGGGCCACTCTGAATGAGACCATTTTTGAGAAAGAAAATGTCATACAAGATTTTGAGGAAGAAAGAGAAGCTTTTGTGCAAGAACTTCTTAGCATTCGTCGCCAATTAAAGACTGCTACTAATCAACAGTCATTGTTCGATATTACTGGCAGTCAGTTGAACGACGAGCAGGTTGAAGAGAACACTTTGGTTACTAATACCACATTGAAAGACCTAATAAATGAATGCTCACAATTGGTTAATAGGACTTTAGATGAACGGTTGCAGTACGAGGTTACTATAGGAGGACTCCGTAATAGCCTCTTAACGAAGGATCAAGAGATTGAATATCTTAATGCAAAGGTTGTCGAAATTTCGGTGACTGATGAAGTTGCTCGCTCTTATGCAAATTCAATTGAAGATTCTATGAAAATTTCGTTAGAGAAGGAGAGGGATACGAATGCCACATTAGACAGAGTGCTAGCTTCTGTCAACTCAGTATTGAATCAGCAAGATCTCCCTGGCGATTCTACATCTGAGAAAACAGTTCTTGTTGAAAGAAGCGCTTCTCTGTTGGTTGATAATTATAAAAAAATCCTTCTGGAAATCAATCAACTCCAAAAATGTTTATCTGGGGCAGAGTCTGACATCGTCTTTGCAGGATTGGAAACAATTTTGGGCTCTGCTTGTGATGAGTTAATTGAGCTCAAAGCTAAAGAGGTAAGCAATGTTGCAAAAATGCATCAACTGGAAGATGAAAATAGAAGATTGGCTGTTGAGCTAGACAATTACAGATTGACAGTTGAGACTGTTAATGCAGAACTTGAAAAAGCAAAAAGTGAGCTGGAACAGGAAATGATGAGGGGTGCTAGTACCAAAGAGAAGCTAAAAATGGCTGTGACAAAAGGCAAGGCGTTAGTACAGCAACGTGATGCATTAAAACAGTCTCTAGCTGACAAAGGTCATGAGCTTGAAAAATATTCTATTGAATTACAAGAGAAATCGAATGCCTTGGAGGCTGCAGAACTAATTAAGGTTGACTTGGCTAAAAATGAAAATTTAGTTGCATCACTTCAGGAAAATTTGTCGCAAAGGAATACGGTCCTTGAAACTTTTGAGGATATCATATCTCAAGTTGAAGTTCCTCGTGAACTCACGTCAATGGATAGTATAGAAAGAATCAAGTGGCTTGTGGATGAGAAGAAAGTCCTGGAGGCTATTTTATTGGAGTTTCATAAATTAAAAGATACTCAAAACTTATCTGATTTTCCAGATTTGATTGCACCTTATGACCTGAAATCTTCCGTCAGTTGGCTTAAGGAATCATTTTTTCAGGCTAAAGATGAAATAATGATCTTGCGAGATGAACTTGCTAAAACAAAAGAAGCAGCATGTGGAGAGATTGACCGCATAAGTGCGTTACTTTCAATTGAATTACAGGAAAAGGACTATATCCAGGAGGAGTTGGATGATCTGTTAAAAAAACACGAAGATCTGTTAAGAAAACACGAAGATCTGTTAAGAAAACACGAAGATCTGTTAAGAAAACACGAAGTGGTCATGATAAAAGAGCATCAGGCTTCGTTGGAGAAGGCTCAAATCATAAAAATGTTACAAGAAGAATCTGGAATGATAACAGATGATGGAGGGGTCAGTGGAATTTCGTTGGACTTAAACTTGCTTGCTTACAGATGCTTTCAGAGGATAAAAGAGCAGGCCAGTGTTGCTGCTGAAATTTCTAGTGAATACGTAGAATCTTTTGCAAAGGTTCAAACTCTTTTGTATGTTAGTCATCAGGATTTGATGCTCCATGATATACTCCTAGAAGAGGAGTCTTCTAATATCAGTAATTACTCAACTAGATTAAGATCAGTATCTCAAGAACTTAGAGAAGTGAAAGAGGAAAATGACTCTTTGCAGAGAGATATCCAAAGATCAGAGGAGAAATATGCCATGCTAAGGGAAAAGTTGTCCTTGGCAGTCAAGAAAGGCAAAGGACTTGTTCAGGATAGGGAAAATATGAAAAGTCTCTTAGATGATAAGAACATAGAAATAGAGAAGTTGAAATTACAATTAGATAGTCTAGAATCAACAGTTGATGATTGCAGAAATCAAATCAATTTGTTGTCTATTGATACACAGCGCATTCCAGAGTTGGAGGCTGATCTTGATATCTTGAAGGGAAAATGCAATCAATATGAGCAGTTCTTATTAGAGAGCAATAATATGTTACAGAAAGTAATTGAATCAATTGATGGAATTGTTCTTCCCATTAATATAGTGTTTGAAGAGCCTATAGCTAAGGTGAAGTGGATTGCAGACTACATTAGGGAATCACATGATGCTAAGATATGTAAAGAACAAGAATTGGAGAGTATTAAAGAGGAATTAAGTACTATGGAAAGTAAATTAAGAAATGCTTTAGCTGCTATGAACTCATTGGAAATTGCATTATCATCTGCTGAGAAAAACATTTTTCAACTTTCTGAGGAGAAAAAGGAAATAGAATCTAGTAAGATACACATTGAACACGAATTACAGAAAGCATTAGATGAAGCCTATTCACAGTCCAGCAAGTCTGCAGAGACTTATTCATCCATGAACCTACTTCAAGAATCGTTATCACAGGCAGAAAATAAAATACTTGCGCTTGTCAAAGATAAAGAAGAAGCTGAAGTTTGTAAAGTCACTGTAGAGATGGAATCTAAAAAAGTAAAGGAGGAAGTGGCTATTCAGACAGATAAATTGGCAGAGGCCCATAGAACTATAAACACGTTAGAAAAGACATTAATCGAGCTTGAGACAAATGTTGCTTTGCTGAATGAACAGAATGCTGAAGCACAAAGTGCTATAGAGAAGCTAGAAACTGAGCGAAAGATATTGCAAGAGGAAGTCAGCTCTCAAGAGTGCAAAGTTGTTGAGGCAGTTGAATCAATAACATCTTTGGAAAATGCATTACGTAAGGCAGAAAGTAAAATTTCTATAATTGAAGGTGAGAGGAAAGATTCTGAAAATGAAATATTTGCTCTAAATTCCAAATTAAATGCATGCATGGAAGAGTTGGCCGGGACTAGTGGCAGCTTAGAGAGCAGATCTATAGAGTTTGCGGGCTACCTCAATGATCTTCATAAGTTTATTGCAGATGAGACATTGTTGACTGTGGTGACACGATGCTTTGAGAAGAACTTTGAGAGACTAAGAGAGATGGATATCGTTCTGAAGAACACTAGTGATTGTTTTGTTAACAGCGGTATAATAGGTTCTCATAGTCATCATGCTGTTAAGGATCCGCATGCTATGGAGTACCTCTCTCATGAAAAGCTCCTTGATTTTGATGCTGAAATTGAAAGTGGTAAAGTGGTTGTTGAAGGTGATGCTGGCAACATTTCTTCATCTTTTAGAAAGATTATGGAAGGAATATGGTTAAAGAACGAAAGATTCACAGATTATTTTGAAGGTTTCTCCTCTTCAATGAACGGGTTTATGGCTGATCTGTTAAAAAAAGTAGAAGCAACAAGGGAGGAAGTAGTTTTTGTATGTGGGCACGTTGAATCCTTGAAAGAGATGGTGAAGAATCTCGAAATGTATAAACAGGAACAAGAAAATACCAAAGTGATGCTGGAAGATGATGTTTCACTTTTATTGTCTGCCTGTGTTGAAGCAACAAAAGAACTTCAGTTTGAAATGACCAACCATCTACTCTTACTCGACTCTATTCCCGAACTTGACAACTTGAAGGATAGCATACCCATGGAAAGTAGTGAAACTAATGGAGCTTCAGCTGCAGAGTCTCCAGCAAATTCTACTAGAAGCAAGTCAGCTGCTGCTGCAGAAAAATTATTGGCTGCAAGTAGAAAAGTTCAATCTATGGTTAAACAGTTTGAGAGCGTCATTAAGGGTGCAGCTGCTAGAATTCAAGATACGCAGCATATATTAGAAATAACTGAGGCAACTACTGAGAAAGTTAGAGAGGAAAGGGACTTGAACAAAATTATGGTAGTTAAGTTGGAGGCTGATTTACAACTATTACAGAATTCCTGTGATGATCTGAAGCGTCAACTGGAGGCCTGTCAGGCAAATAAAGAAGAGTTGAAAGAAAGAGAGGCTGAAGTTTCATCATTGTATAGTAGTTTGGTGAAAGAACAAGAAGACTGCGTTTTGTCAGCAATGCAAATGAAAGCCCTCTTTGAGAAAGTTAGAAGAATCGAGTTCCTTTTTCAAGAATCAGAATATCAAGATCTGGAACAATATGCTTCACCTGATGTAAAGAAGCTCTTTTACCTAACTGATTATGTTTCTGAGTTACAAGATCAGCTGAAATTATTATCTCATGACAAGCAAAAGCTGCAGTCTACAGTGACTACACAAACACTTGCAATTGAACAGCTAAAAGAGGGGGTTGATAGAGCATCGAGGGATCATCTCGATTTAGAGGAGATGAAGAAAGATCTCTCGGAGCTTTCTTATTCTTTGGAACAACATACTAGTTTGTTGGGTAGTAAATATAGTGGAGATTCTGAGTCCGATGGGTTGAAGGAACTAGTAAGAACTATAGCAAGGCAGGTCCTGGATTTGCTTTCAGAATCTGAAAATTCAAAAACCAAATTTGAGGAACTGAGTAAGAAGTTAATAGGTAGCCAAAAGGTTGTGGATGAACTAACTACCAAGAATAAGCTACTTGAAGAGTCACTTCATGGCCGGACATCTCAATCAGAGATCATAAAAGAAAGGAGCATCTTTGAAGCACCATTTCCTTCTGGATCAGAGATATCAGAAATTGAAGAAGCGGGACCAGTCGGGAAAAGTGCAATACCGCCTGTTCCACCAGCCTCAGCTGCCCATGCTCGAATGTTGCGAAAAGGTTCAACTGATCATCTTGCGATTGACGTTGAAACAGAATCCGATCGTTTAATAGGAAATGCCATGGAAATTGATAAAGACAAAGGTCATGCGTTCAAATCTCTCAATTCATCAGGTCTTATCCCAAGACATGGAAAACTTATTGCAGATCGAATTGATGGAGTTTGGGTCTCCGGCGGTCGAATTCTAATGAGTCGTCCAGGCGCAAGGCTAGGTCTCATTACCTACTGGGATTTCCTTCATGTGTCGGTAAATTGTATCATCCACCAAACCAAATACTCTATAAGAAGAAACCCATACTTCCTCTTCTTCTTCAACCACAGCTCTTCCTCTTCTTGCCATTTTCCATTTGCTCAAAACAATCTGCAATCTTCAGATATGACATCAGCTCACAGGGGTTCATCTCTGCCCAAGTTTGGTGAGTGGGATGAAAAAGATCCTGCTGCAGCTGAAGGGTTCACAGTGATTTTCGATAGGGCTCGAGACACTAAGAAGAATGGAGGAACTCCAAATAATGTGATACCACAGGAAAACCAAAACCAATACAAAAGTAAAAATCATGAAGCTGCTAAGAAGAATCACAATCCAAAGTATTCAAGAAAGGAGAAAGCATCGCATAGCTGCTTGTGCTTCTGA 5958 38.91 MSENHDPEQALLSSGTGAEDGNNGVEIVEITVNDGVVESSSETSADIVSENDSVLQSSEISSGFVPSEPNQGSAISPEVPRTEGAENLPQDDSDDIVIVEDVGKEDMFVDCPDELVGNADIREAVAAAETQGSSTEEVPSDTQELQYEVEKVSLIHEVENTRATLNETIFEKENVIQDFEEEREAFVQELLSIRRQLKTATNQQSLFDITGSQLNDEQVEENTLVTNTTLKDLINECSQLVNRTLDERLQYEVTIGGLRNSLLTKDQEIEYLNAKVVEISVTDEVARSYANSIEDSMKISLEKERDTNATLDRVLASVNSVLNQQDLPGDSTSEKTVLVERSASLLVDNYKKILLEINQLQKCLSGAESDIVFAGLETILGSACDELIELKAKEVSNVAKMHQLEDENRRLAVELDNYRLTVETVNAELEKAKSELEQEMMRGASTKEKLKMAVTKGKALVQQRDALKQSLADKGHELEKYSIELQEKSNALEAAELIKVDLAKNENLVASLQENLSQRNTVLETFEDIISQVEVPRELTSMDSIERIKWLVDEKKVLEAILLEFHKLKDTQNLSDFPDLIAPYDLKSSVSWLKESFFQAKDEIMILRDELAKTKEAACGEIDRISALLSIELQEKDYIQEELDDLLKKHEDLLRKHEDLLRKHEDLLRKHEVVMIKEHQASLEKAQIIKMLQEESGMITDDGGVSGISLDLNLLAYRCFQRIKEQASVAAEISSEYVESFAKVQTLLYVSHQDLMLHDILLEEESSNISNYSTRLRSVSQELREVKEENDSLQRDIQRSEEKYAMLREKLSLAVKKGKGLVQDRENMKSLLDDKNIEIEKLKLQLDSLESTVDDCRNQINLLSIDTQRIPELEADLDILKGKCNQYEQFLLESNNMLQKVIESIDGIVLPINIVFEEPIAKVKWIADYIRESHDAKICKEQELESIKEELSTMESKLRNALAAMNSLEIALSSAEKNIFQLSEEKKEIESSKIHIEHELQKALDEAYSQSSKSAETYSSMNLLQESLSQAENKILALVKDKEEAEVCKVTVEMESKKVKEEVAIQTDKLAEAHRTINTLEKTLIELETNVALLNEQNAEAQSAIEKLETERKILQEEVSSQECKVVEAVESITSLENALRKAESKISIIEGERKDSENEIFALNSKLNACMEELAGTSGSLESRSIEFAGYLNDLHKFIADETLLTVVTRCFEKNFERLREMDIVLKNTSDCFVNSGIIGSHSHHAVKDPHAMEYLSHEKLLDFDAEIESGKVVVEGDAGNISSSFRKIMEGIWLKNERFTDYFEGFSSSMNGFMADLLKKVEATREEVVFVCGHVESLKEMVKNLEMYKQEQENTKVMLEDDVSLLLSACVEATKELQFEMTNHLLLLDSIPELDNLKDSIPMESSETNGASAAESPANSTRSKSAAAAEKLLAASRKVQSMVKQFESVIKGAAARIQDTQHILEITEATTEKVREERDLNKIMVVKLEADLQLLQNSCDDLKRQLEACQANKEELKEREAEVSSLYSSLVKEQEDCVLSAMQMKALFEKVRRIEFLFQESEYQDLEQYASPDVKKLFYLTDYVSELQDQLKLLSHDKQKLQSTVTTQTLAIEQLKEGVDRASRDHLDLEEMKKDLSELSYSLEQHTSLLGSKYSGDSESDGLKELVRTIARQVLDLLSESENSKTKFEELSKKLIGSQKVVDELTTKNKLLEESLHGRTSQSEIIKERSIFEAPFPSGSEISEIEEAGPVGKSAIPPVPPASAAHARMLRKGSTDHLAIDVETESDRLIGNAMEIDKDKGHAFKSLNSSGLIPRHGKLIADRIDGVWVSGGRILMSRPGARLGLITYWDFLHVSVNCIIHQTKYSIRRNPYFLFFFNHSSSSSCHFPFAQNNLQSSDMTSAHRGSSLPKFGEWDEKDPAAAEGFTVIFDRARDTKKNGGTPNNVIPQENQNQYKSKNHEAAKKNHNPKYSRKEKASHSCLCF 1985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6563412 6574511 + CmaCh18G007260.1 Cma18g00726 314064

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00726 1985 PANTHER OS02G0598300 PROTEIN 1051 1853 - -
Cma18g00726 1985 PANTHER OS02G0598300 PROTEIN 39 494 - -
Cma18g00726 1985 Coils Coil 1487 1528 - -
Cma18g00726 1985 PANTHER OS02G0598300 PROTEIN 501 1047 - -
Cma18g00726 1985 Coils Coil 1586 1606 - -
Cma18g00726 1985 SUPERFAMILY Tropomyosin 944 1189 - -
Cma18g00726 1985 Coils Coil 1614 1641 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 1403 1426 - -
Cma18g00726 1985 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 1051 1853 - -
Cma18g00726 1985 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 501 1047 - -
Cma18g00726 1985 Coils Coil 825 866 - -
Cma18g00726 1985 Coils Coil 162 196 - -
Cma18g00726 1985 Coils Coil 401 446 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 34 77 - -
Cma18g00726 1985 Coils Coil 1021 1041 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 1 90 - -
Cma18g00726 1985 Pfam Cleavage site for pathogenic type III effector avirulence factor Avr 1905 1939 IPR008700 -
Cma18g00726 1985 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 39 494 - -
Cma18g00726 1985 Coils Coil 762 817 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 1940 1957 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 1 20 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 1400 1426 - -
Cma18g00726 1985 Coils Coil 1070 1160 - -
Cma18g00726 1985 Coils Coil 937 992 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 1938 1985 - -
Cma18g00726 1985 Coils Coil 1337 1364 - -
Cma18g00726 1985 Coils Coil 478 498 - -
Cma18g00726 1985 MobiDBLite consensus disorder prediction 1958 1978 - -
Cma18g00726 1985 Coils Coil 636 674 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00726 - - - csv:101218359 2482.6
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01803 Cma18g00726 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01576 Cma-Chr1:10889715 Cma18g00726 Cma-Chr18:6563412 4.36E-10 dispersed
Cma09g00531 Cma-Chr9:2363083 Cma18g00726 Cma-Chr18:6563412 3.95E-17 dispersed
Cma20g00689 Cma-Chr20:3152742 Cma18g00726 Cma-Chr18:6563412 4.67E-12 dispersed
Cma04g01803 Cma-Chr4:9092997 Cma18g00726 Cma-Chr18:6563412 0 transposed
Cma04g01804 Cma-Chr4:9096030 Cma18g00726 Cma-Chr18:6563412 0 transposed
Cma14g00688 Cma-Chr14:3489496 Cma18g00726 Cma-Chr18:6563412 1.60E-15 wgd
Cma18g00209 Cma-Chr18:1142564 Cma18g00726 Cma-Chr18:6563412 1.07E-14 wgd
Cma18g00726 Cma-Chr18:6563412 Cma04g01802 Cma-Chr4:9092217 6.79E-13 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1114 . . . . . . . . Cmo04g01902 Cmo18g00713 . Cma18g00726 . Car18g00674 Sed06g1718 Cpe09g00563 Cpe01g01587 Bhi07g01850 Tan04g0116 Cmetu10g1236 Lac13g0100 Hepe10g1555 . . Cla05g02625 Cam05g2815 Cec05g2851 Cco05g2882 Clacu05g2819 Cmu05g2667 Cre05g2783 . . Cone8ag0714 . Lsi04g00640 . . . . Blo11g00999 . . . . . . . . . Cma04g01803 . Car04g01816 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004326 1 1 1 1 1 1 2 1 1 1 1 1 3 1 1 2 1 1 2 1 1 1 1 1 1 1 1 4 5 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00726 Cma_Chr18 FPKM 8.584676 9.55601 7.798472 8.499719 8.738665 7.878447 9.079472 7.18321 6.071887 7.41733