Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00729 ATGTTGAACAGAACCCAAGCCACCGCCAGGATGAGTGGCAGCAACAGGGCCAGCCCCCGGTTATCGCCCTCTGCTAGATCGGCGATTTGCTGGGTGGCGAAGGCAGCATCAGTGGAGCTCAGTGTGGAGAAGATTACTCTGGCGACGGCGGTTCCAGGGAGGGAAGATTTGGCGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCCGTTTGATCTCCCAAAAATGGAAGCTGAATCAGTCGCAGGCTATAAGATTTGGAAGAACAATCATAAAAAAAATTCCCTTTCATTTTCTTTTGGAGAACAACAATTCCTAAATCATCCTCGCCCTCGTCTTCTTCATTATCATCATCATCATCATCATCTTCCATTTCGAGTTGCATCTGATCCAATTAAACAAAAAAAACTGGGCAATTCTTGGTGGATGAAGTTGGGTTTTCATGGATTTTCGTTTCCATTCCTATATTTAAGAGTGGAACCATTTCTATCAAGTTTGGGCACTGCAGAGCCTTTGGCAGTGCCCATGGATGCCACGACAAGCGAAACGGCGCCTATACAATTCTGTAGCATTCCTGATCAATCGGTTTCGAGTATCGTTACCAATCCAGCGTCGACATTTCCTTTATCCAAACGCCATTGCTTTGGGGAATCCTACCCCGGTGAATTCCCCTTAGCTACCAATCCTTCCATTGTTCTTCATGTCCTAACAGCATGTAACTTGGATCCGAAAGACCTTGCAAAGTTAGAGGCGACGTGTTCGTTCTTTAGACAGCCTGCGAATTTCGCTCCTGATTATGAATTATCGATTTCGGAACTTGCTGCTTTGGATATGTGTCGAAAGAGAGCCATATTTAAACCTATGACAACAGAGCAGCAGCAAGCTTTGAAGCAAAGATGTGGTGGTTCATGGAAACTGGCATTGAGGTTTTTACTGGCTGGAGAAGCTTGTTGCAGAAGGGAGAAATTCCTGGCGATAGCAGGACCCGGTCATAGCATCACGGTCACGTCGAAAGGAGCTGTTTACTCCTTTGGTTCCAACAGCTCAGGACAGCTTGGACATGGTACGACCGAAGACGAATCACGGCCTCGCCTAATCAGATCCCTGCAAGGAATTCGAATAATTCAGGCAGTAGCAGGTTCCGGGAGGACAATGTTAATCAGCGATGCCGGGCGTGTTTATGCATTTGGCAAGGACTCATTTGGTGAAGCTGAGTATGGAGCTCAAGGAGCTCCTGTTGTTACGACACCGAAGTTGGTCGAATCCCTTAAGGATATATTTGTGGTGCAAGCTGCAATTGGCAATTTCTTCACTGCTGTACTATCAAGAGAAGGTAGAGTGTACACATTTTCTTGGGGAAGTGACAGTAGACTCGGTCATCAAACCGAACCGAACGACTTGGAACCACGGCCATTGATGGGAGCCTTAGAGAACACTCCAGTTGTTCAAATTGCTGCTGGATATTGCTATCTTCTTGCTCTAGCTTGTCATCCTAATGGCATGTCAGTGTACTCTGTAGGGTGTGGACTGGGTGGGAAGCTCGGTCACGGTTCAAGAACGGACGAGAAACACCCACGACTCATTGAACAATTTCAGCTTCTGAATCTTCAGACAGTCGTGGTTGCTGCTGGTGCTTGGCACGCAGCCATTGTAGGTCAGGACGGTCGAGTTTGTACATGGGGTTGGGGTCGTTACGGGTGCCTGGGTCATGGGAATGAGGAGTGTGAGTCTTCTCCAAAGGTGGTGGAAGCATTAAGCAATGTCAAAGCAGTTCATGTTGCTACAGGAGATTATACAACCTTTGTAGTATCTGATGATGGCGACGTGTATTCTTTCGGTTGCGGAGAATCCGCTAGTCTGGGGCATAATAACGGCATCGCTGATGGAGAGGGGAATCGGAACCCTCACATTTTAAGCCCGGAACTCGTAACGTCTCTGAAGCAAATTAACGAGCGGGTAGTTCAGATTAGCCTCACTAACTCAATTTACTGGAATGCACACACCTTCGCACTGACCGAGTCGGGAAAGTTGTATGCATTTGGTGCTGGAGACAAAGGGCAGCTCGGAGTCGAACTTATGGCGAATCAAACTGAAAGGGGAAATCCAGAGCAAGTTGACATTGATCTAAATTAA 2136 47.14 MLNRTQATARMSGSNRASPRLSPSARSAICWVAKAASVELSVEKITLATAVPGREDLAFFISRLAETNRAPFDLPKMEAESVAGYKIWKNNHKKNSLSFSFGEQQFLNHPRPRLLHYHHHHHHLPFRVASDPIKQKKLGNSWWMKLGFHGFSFPFLYLRVEPFLSSLGTAEPLAVPMDATTSETAPIQFCSIPDQSVSSIVTNPASTFPLSKRHCFGESYPGEFPLATNPSIVLHVLTACNLDPKDLAKLEATCSFFRQPANFAPDYELSISELAALDMCRKRAIFKPMTTEQQQALKQRCGGSWKLALRFLLAGEACCRREKFLAIAGPGHSITVTSKGAVYSFGSNSSGQLGHGTTEDESRPRLIRSLQGIRIIQAVAGSGRTMLISDAGRVYAFGKDSFGEAEYGAQGAPVVTTPKLVESLKDIFVVQAAIGNFFTAVLSREGRVYTFSWGSDSRLGHQTEPNDLEPRPLMGALENTPVVQIAAGYCYLLALACHPNGMSVYSVGCGLGGKLGHGSRTDEKHPRLIEQFQLLNLQTVVVAAGAWHAAIVGQDGRVCTWGWGRYGCLGHGNEECESSPKVVEALSNVKAVHVATGDYTTFVVSDDGDVYSFGCGESASLGHNNGIADGEGNRNPHILSPELVTSLKQINERVVQISLTNSIYWNAHTFALTESGKLYAFGAGDKGQLGVELMANQTERGNPEQVDIDLN 711
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6584833 6591763 + CmaCh18G007290.1 Cma18g00729 314067

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00729 711 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 445 IPR000408 -
Cma18g00729 711 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 556 607 IPR000408 -
Cma18g00729 711 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 446 498 IPR000408 -
Cma18g00729 711 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY PROTEIN 177 711 - -
Cma18g00729 711 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 676 711 IPR000408 -
Cma18g00729 711 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 555 IPR000408 -
Cma18g00729 711 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 340 391 IPR000408 -
Cma18g00729 711 Gene3D - 325 498 IPR009091 -
Cma18g00729 711 Gene3D - 499 710 IPR009091 -
Cma18g00729 711 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 177 711 - -
Cma18g00729 711 SUPERFAMILY RCC1/BLIP-II 327 625 IPR009091 -
Cma18g00729 711 PRINTS Chromosome condensation regulator RCC1 signature 545 563 IPR000408 -
Cma18g00729 711 PRINTS Chromosome condensation regulator RCC1 signature 448 462 IPR000408 -
Cma18g00729 711 PRINTS Chromosome condensation regulator RCC1 signature 342 358 IPR000408 -
Cma18g00729 711 PRINTS Chromosome condensation regulator RCC1 signature 603 624 IPR000408 -
Cma18g00729 711 PRINTS Chromosome condensation regulator RCC1 signature 432 448 IPR000408 -
Cma18g00729 711 PRINTS Chromosome condensation regulator RCC1 signature 392 408 IPR000408 -
Cma18g00729 711 MobiDBLite consensus disorder prediction 1 21 - -
Cma18g00729 711 Pfam Regulator of chromosome condensation (RCC1) repeat 339 388 IPR000408 -
Cma18g00729 711 Pfam Regulator of chromosome condensation (RCC1) repeat 607 658 IPR000408 -
Cma18g00729 711 Pfam Regulator of chromosome condensation (RCC1) repeat 504 551 IPR000408 -
Cma18g00729 711 Pfam Regulator of chromosome condensation (RCC1) repeat 445 494 IPR000408 -
Cma18g00729 711 Pfam Regulator of chromosome condensation (RCC1) repeat 555 604 IPR000408 -
Cma18g00729 711 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 608 675 IPR000408 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00729 - - - cmos:111449612 1050.04
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01795 Cma18g00729 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g00877 Cma-Chr9:4304049 Cma18g00729 Cma-Chr18:6584833 1.19E-16 dispersed
Cma18g00729 Cma-Chr18:6584833 Cma07g01272 Cma-Chr7:7087477 2.77E-13 dispersed
Cma04g01989 Cma-Chr4:11773681 Cma18g00729 Cma-Chr18:6584833 4.62E-09 transposed
Cma18g00729 Cma-Chr18:6584833 Cma04g01795 Cma-Chr4:9066519 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g590 . Blo16g01178 . Bda11g01299 Bpe13g01493 . Bma14g01836 . . Cmo18g00716 . Cma18g00729 . Car18g00678 Sed06g1714 Cpe09g00559 Cpe01g01582 Bhi07g01841 Tan04g0127 Cmetu10g0484 Lac13g0111 Hepe10g1560 . . Cla05g02623 Cam05g2811 Cec05g2847 Cco05g2878 Clacu05g2815 Cmu05g2663 Cre05g2779 Cone13ag1098 . . . Lsi04g00635 Csa05g02252 Chy10g00821 Cme10g00610 . Blo11g01031 Bda07g01651 Bda11g01299 . . . Bma06g00592 . . . Cma04g01795 . Car04g01809 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004026 2 2 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 1 4 1 1 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00729 Cma_Chr18 FPKM 8.072493 9.961994 14.190236 14.103848 6.519314 7.249955 7.173481 8.830304 8.799258 9.557066