Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00732 ATGAGTGTCCGATCATGGCTAATCCCCTGTGCCACCGCCACTGCTACCGCCGCCGACTCCAATACGCCGCCTCAATCCTCCTCCTTCTCAATTTCCGATACGTCGGTAAACTCTTCGTCGTCGTCGACACCGACTTCCGACACTAGCTGCTCCACTCTCCAAAGCAATCTCTCCCTTCAATCCCAACCGTCCATTCCATCTCTCCAAACTCTCCCCACCGTCACCGATACCGGAAACGTCGCCGTTTCTCAACTTCACCTCGCCTCTTTCAAGCTCCCAATCTCCCATCTCGCCGTCCATGGTCCCCACCTCTATGTCGCCATCGCTCACGAAATCAACGTCTACGATCGATCCACCTACACCCACGTAGCCTCAATCAACGCTCGAGATTCCTCCTCCGGCGCCGTCAAGGGAATCGCCTTTCTCAACGCCCAAATCCTTACTTCTCATCAAGATGGAAAAATCCGCGTCTGGAATTTAACGAATAATCAATTCAAAAAGGTCAACACTCTCCCGACAGTCAACGATCGCCTCCGCCGCTTCATACTCCCGAAAAATTACGTCAACGTCCGCCGTCACAAGAAAGTCCTCTGGATTCAACACGCCGACGCCGTCACTGGACTCGCCGTCAACAGAAATTCGTTTTACTCTGTTTCTTGGGATCGGAGTTTGAAATTCTGGCAAGGCTCCGACCACCGCTGCGTCGAGTCCGTCAAGGCAGCGCACGAGGACGCCATAAACGCAGTGGTCGTCTCCGCCGCGGGGATTGTGTACACCGGATCGGCCGATCGGAGAATCAGAGTATGGTCGAAACCCGCGGCGGAGAAACGGCATATTCTGGTAACGACTTTAGAGAAGCACAAATCGGCGGTGAATGCATTGGCGTTAAACGACGACGGTTCATTGCTGTTCTCCGGTGCCTGCGACCGGTCCGTTCTGGTGTGGGAAAGAGTGGACGGCGCGAACCATATGGCGGTGATCGGAGCATTGAGGGGACACAAAAACGCGATTCTCTGTTTGATCTACGTCTCGGATTTGCTGTTGAGTGGGTCCGCCGATTGGACGGTCAGAGTTTGGCGACGTGTAGGAGATGGGAGTTTTAATTGCTTGTCAGTACTGGAGGGTCACCGGAAACCGGTGAAATCTCTGGTGGTGGTTTCCGACGGGTTGTCAAACGGCGTCGTTTCGGTGTGCAGTGGGAGTCTGGACGGTGAACTGAAAGCCTGGAAACTCTCGTTTTCGAATCTTAATGGAATATTAAATTAG 1266 53.55 MSVRSWLIPCATATATAADSNTPPQSSSFSISDTSVNSSSSSTPTSDTSCSTLQSNLSLQSQPSIPSLQTLPTVTDTGNVAVSQLHLASFKLPISHLAVHGPHLYVAIAHEINVYDRSTYTHVASINARDSSSGAVKGIAFLNAQILTSHQDGKIRVWNLTNNQFKKVNTLPTVNDRLRRFILPKNYVNVRRHKKVLWIQHADAVTGLAVNRNSFYSVSWDRSLKFWQGSDHRCVESVKAAHEDAINAVVVSAAGIVYTGSADRRIRVWSKPAAEKRHILVTTLEKHKSAVNALALNDDGSLLFSGACDRSVLVWERVDGANHMAVIGALRGHKNAILCLIYVSDLLLSGSADWTVRVWRRVGDGSFNCLSVLEGHRKPVKSLVVVSDGLSNGVVSVCSGSLDGELKAWKLSFSNLNGILN 421
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6615935 6617200 + CmaCh18G007320.1 Cma18g00732 314070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00732 421 PANTHER F21J9.19 18 415 - -
Cma18g00732 421 Pfam WD domain, G-beta repeat 281 315 IPR001680 GO:0005515
Cma18g00732 421 Pfam WD domain, G-beta repeat 328 359 IPR001680 GO:0005515
Cma18g00732 421 Pfam WD domain, G-beta repeat 235 270 IPR001680 GO:0005515
Cma18g00732 421 Pfam WD domain, G-beta repeat 368 410 IPR001680 GO:0005515
Cma18g00732 421 MobiDBLite consensus disorder prediction 17 53 - -
Cma18g00732 421 Gene3D - 67 177 IPR015943 GO:0005515
Cma18g00732 421 PRINTS G protein beta WD-40 repeat signature 146 160 IPR020472 -
Cma18g00732 421 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Cma18g00732 421 PRINTS G protein beta WD-40 repeat signature 397 411 IPR020472 -
Cma18g00732 421 SUPERFAMILY WD40 repeat-like 103 412 IPR036322 GO:0005515
Cma18g00732 421 Gene3D - 276 418 IPR015943 GO:0005515
Cma18g00732 421 Gene3D - 186 275 IPR015943 GO:0005515
Cma18g00732 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 239 270 IPR001680 GO:0005515
Cma18g00732 421 ProSitePatterns Trp-Asp (WD) repeats signature. 146 160 IPR019775 -
Cma18g00732 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 146 168 IPR001680 GO:0005515
Cma18g00732 421 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 18 415 IPR045182 -
Cma18g00732 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 316 - -
Cma18g00732 421 SMART WD40_4 119 159 IPR001680 GO:0005515
Cma18g00732 421 SMART WD40_4 192 228 IPR001680 GO:0005515
Cma18g00732 421 SMART WD40_4 231 270 IPR001680 GO:0005515
Cma18g00732 421 SMART WD40_4 277 316 IPR001680 GO:0005515
Cma18g00732 421 SMART WD40_4 366 410 IPR001680 GO:0005515
Cma18g00732 421 SMART WD40_4 323 360 IPR001680 GO:0005515
Cma18g00732 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 330 359 - -
Cma18g00732 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 330 359 IPR001680 GO:0005515
Cma18g00732 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 316 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00732 - - - csv:101204588 616.305
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma15g00831 Cma18g00732 CCT
Cma04g01790 Cma18g00732 CCT
Cma04g01790 Cma18g00732 ECH
Cma15g00831 Cma18g00732 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma13g00907 Cma-Chr13:7262877 Cma18g00732 Cma-Chr18:6615935 3.31E-10 dispersed
Cma18g00145 Cma-Chr18:738229 Cma18g00732 Cma-Chr18:6615935 1.29E-11 dispersed
Cma18g00732 Cma-Chr18:6615935 Cma09g00180 Cma-Chr9:761198 2.31E-72 dispersed
Cma10g00081 Cma-Chr10:335128 Cma18g00732 Cma-Chr18:6615935 2.57E-102 wgd
Cma18g00732 Cma-Chr18:6615935 Cma04g01790 Cma-Chr4:9033323 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g602 . . . . . . Bma14g01832 . . Cmo18g00721 . Cma18g00732 . Car18g00682 Sed06g1708 . . Bhi07g01834 Tan04g0134 Cmetu10g0004 Lac13g0117 Hepe10g1568 . . Cla05g02616 Cam05g2804 Cec05g2840 Cco05g2872 Clacu05g2808 Cmu05g2656 Cre05g2772 . Cone19ag1083 . . . Csa05g02258 Chy10g00828 . Blo06g00839 Blo11g01035 Bda07g01648 . . . . . . . Cmo15g00862 Cma04g01790 Cma15g00831 . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003359 2 2 1 1 2 2 1 2 2 1 2 2 2 0 2 3 2 1 0 2 2 2 1 2 2 0 2 2 2 2 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00732 Cma_Chr18 FPKM 4.779621 5.498323 6.07586 5.326914 1.299299 1.512847 1.944299 14.634368 13.974105 13.688066