Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00746 ATGTTGGAAAGACCTAGAAGAGTTTCTTCAAGAGAGATTTTGCAGGGAGCTCCATTGATTACAAAGGACTACATTTTGAGTTCTTGCCATTTGGGGGTGGTCGGAGGATATGCTCGGGGTTGGACATGGGAGGTGAAATCTGTGGATTTGGCTTTTGCAAATCTCTTGTACCATTTTGATTGGAAGTTGCCGGAGGGGATGAAGGAGGAGGACTTGGACATGGAAGAGAAATTAGATTATTTTTTACTTTTCAAAAGTTTTCACCCTACAGTGATGACTGACGAGAGATGTGCAAAATTTTGGTTTGAAGGGGATGGATTTCATGAGCATATAAGTCAAGTTCCTGTTGTAGGAGAGCTTTACGGTCCTATTATGAGCCTCAACCTAGGTCGTATAGAAACCATCATCATATCATCGACTGAAACTGCTCGTGCCCTCTTGAAAACTCACGATCTTCAAAGTTGCAACAGACCACAAACTCATGCTATGAAAAAATTCACTTACAATTTTCTTGACCTTGGTTTTTCACCCTACAATGATTACTTGCGAGAGATGCGCAAAATTTCTTCTTGTGGAGCTATTGTTGATCTTAGTGAGAAGTCCATTGCTCTCACTACTGGTGTTATTTTTAGAATTGCATTTGGGAAGCCATTTGAAGGGGATGGATTTCATGAGCTTATAAGTGAAGTTGAAGCCCTGATGGGAAGCTATAGTGCTTCTGAGTTTTTTCCAGTTCCTTTTGTGGGAGAAGTATTTGATTGGTTTAGTGGTCGAGAAGCTAGAATTGAGAAAGTTTTTAATGAGATAAATGCTCTATTTCAAAAGGTGATTGATGAACACCTCTGTCCTGAGAGGCCTAAGCCAGAGCAAGATGATATCATTGATGTGCTTTTGGCTATTGGTAAAAAGCAAGTTCATCCTCACACGGTTGTTATTAACCATGAAAACATCAAAGCCATTCTTTTTAACATATTTGTTGCAGGATTAGACACTGGTTCAATTACAATAGTCTGGGCAATGGCAGAACTCGCAAAAAATGCAAAATTGATGAAGAAAGCTCAAGAAGAAATAAGAAACTATGTGAGAAACAAACAAAAGGTAAGAGAGAAAGACGTCGAAGAGCTTCCATATTTAAAAATGATAGTAAAAGAGACACTAAGACTACATCCACCAGCACCTCTTCTCCTTCCAAGAGAAACCATTTCTCATTTCAAAATTGAAGACTATGATTTTTACCCGAAAACGAAGGTTCAAGTAAATATTTGGGCAATTGGACGAGACCCCACATACTGGACAGACCCAGAAGAGTTCCTTCCAGAGAGATTTGCAGAGAGCTCGGTTGATTACAAAGGACAACATTATGAGTTCTTACCATTTGGGGCTGGTCGGAGAATATGCCCGGGGTTGAATATGGGAGTAAAAACTGTGGAGTTAGCTTTAGCGAATCTTTTGTATCATTTTGATTGGAAGCTTCCGAATGGGATGAAAGAGGAAGAGTTGGATATGGAAGAGAGTTCAGGTTTGAGTCTCACCATCTACAAAAAGTTGCCTCTAAAGCTTGTACCAATTTTATACCATCCATGA 1584 39.65 MLERPRRVSSREILQGAPLITKDYILSSCHLGVVGGYARGWTWEVKSVDLAFANLLYHFDWKLPEGMKEEDLDMEEKLDYFLLFKSFHPTVMTDERCAKFWFEGDGFHEHISQVPVVGELYGPIMSLNLGRIETIIISSTETARALLKTHDLQSCNRPQTHAMKKFTYNFLDLGFSPYNDYLREMRKISSCGAIVDLSEKSIALTTGVIFRIAFGKPFEGDGFHELISEVEALMGSYSASEFFPVPFVGEVFDWFSGREARIEKVFNEINALFQKVIDEHLCPERPKPEQDDIIDVLLAIGKKQVHPHTVVINHENIKAILFNIFVAGLDTGSITIVWAMAELAKNAKLMKKAQEEIRNYVRNKQKVREKDVEELPYLKMIVKETLRLHPPAPLLLPRETISHFKIEDYDFYPKTKVQVNIWAIGRDPTYWTDPEEFLPERFAESSVDYKGQHYEFLPFGAGRRICPGLNMGVKTVELALANLLYHFDWKLPNGMKEEELDMEESSGLSLTIYKKLPLKLVPILYHP 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6699586 6704953 - CmaCh18G007460.1 Cma18g00746 314084

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00746 527 PRINTS E-class P450 group I signature 118 137 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS E-class P450 group I signature 420 444 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS E-class P450 group I signature 456 466 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS E-class P450 group I signature 316 333 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS E-class P450 group I signature 379 397 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS E-class P450 group I signature 336 362 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS E-class P450 group I signature 466 489 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PANTHER CYTOCHROME P450 128 189 - -
Cma18g00746 527 PANTHER CYTOCHROME P450 190 524 - -
Cma18g00746 527 PRINTS P450 superfamily signature 457 466 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS P450 superfamily signature 327 344 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PRINTS P450 superfamily signature 380 391 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 PANTHER CYTOCHROME P450 71B11-RELATED 128 189 - -
Cma18g00746 527 Pfam Cytochrome P450 182 510 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 SUPERFAMILY Cytochrome P450 119 522 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00746 527 Coils Coil 343 370 - -
Cma18g00746 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 459 468 IPR017972 GO:0005506|GO:0016705
Cma18g00746 527 PANTHER CYTOCHROME P450 71B11-RELATED 43 82 - -
Cma18g00746 527 PANTHER CYTOCHROME P450 71B11-RELATED 190 524 - -
Cma18g00746 527 PANTHER CYTOCHROME P450 43 82 - -
Cma18g00746 527 Gene3D Cytochrome P450 108 523 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00746 - - K01773 cmos:111449354 631.328
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01782 Cma18g00746 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00740 Cma-Chr18:6668392 Cma18g00746 Cma-Chr18:6699586 2.33E-139 dispersed
Cma18g00746 Cma-Chr18:6699586 Cma18g00748 Cma-Chr18:6718521 3.02E-10 dispersed
Cma18g00745 Cma-Chr18:6696086 Cma18g00746 Cma-Chr18:6699586 5.21E-58 tandem
Cma18g00746 Cma-Chr18:6699586 Cma18g00747 Cma-Chr18:6709254 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g615 . . . . . . . . . . . Cma18g00746 . . . . . Bhi07g01816 . . . . . . Cla05g02610 . . . . . . . . . . Lsi04g00624 Csa05g02271 Chy10g00834 Cme10g00597 . . . . . . . . . . . Cma04g01782 . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00746 Cma_Chr18 FPKM 0.0 0.0 0.0 0.220304 1.442779 0.888578 1.662859 0.0 0.0 0.0