Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00747 ATGTCGTTCCCTCCATGGCTTCATCTCATCATCTTCCTCTCTTCACTTTTCATCATTCTAAAATGGAAAGCAGCTGCAAATAAAAGAAAGTGTAATTTTCCCCCAAGTCCACCGAAAATTCCAATCATTGGAAACTTGCATCAACTCGGGAAGCTCCCACACAAATCTCTATGGCGCCTCTCTCAGCTTTACGGTCCTATTATGAGCCTCAGCTTAGGCCGTATAGAAATCATCATCATATCATCTGTCGAGACTGCTCGTGCCCTCTTAAAAAACCACGATCTTCAAAGTTGCAACAGACCACAAACACATGCTATCAAAAAATTCTCTTACAATTTCCTCGACATTGCGTTTTCACCTTGTAGCGATTATTGGCGAGAGATACGCAAAATTTGTATGCTTGAGTTTTTCAGTATGAAGAGGGTGTTATCTTACGAACCCATTAGAGAGCAAGAAGTTGGTTTATTTATTGAATCAATTTCACAATCAGCTTCTTGTGGAGCTGTCGTTGATCTTAGTGAGAAGTCAATTGCTCTCACTACTGGTGTTATATTTAGAATTGCATTTGGAAAGCAGTTTGAAGGGGATGGATTTCATGAGCTTATAAGTGAAGTTGAGGCCCTGTTGGGAAGCTATAGTGCTTCTGAGTTTTTTCCAGTTCCTTTCGTGGGAGAGGTATTTGATTGGTTTAGTGGTCGAGAAACTAGACTTGAAAGGGTTTTTAACGAGATGAATGGTTTGTTTCAAGAGGTGATTGATGAACATCTTTGTCCTCAGAGGCCTAAGCCAGAGCAAGATGATATCATTGATGTGCTTTTGGCTATTAGTAAAAACCAAGTTGAACCTTGCTCGGTTGTCATTACCCATGAAAACATCAAAGCCATTCTTTTTGACATATTTTTGGCAGGATTAGACACTAGTTCAATTACAATAGTTTGGGCAATGGCAGAACTCGCAAAAAACTCAAAATTGATGAAAAAAGCTCAAGAAGAAATCAGAAACTATGTGGGAAACAAACGAAAGGTAACCGAGAAAGACGTAGAAGAGCTTCCATATTTGAAAATGATAGTGAAAGAGACCCTAAGACTACATCCACCAGCACCTCTTCTTCCAAGAGAAACCATTTCTCATTTCAAAATTGAAGACTATAATTTTTACCCGAAAACGATGGTTCAAGTGAACGTTTGGGCAATTGGACGAGACCCCACATACTGGAAAGACCCAGAAGAGTTCCTTCCAGAGAGATTTGCAGAGAGCTCGATTGATTACAAAGGACAACTGTTAAGGATATTTAAGATTTACCTTCGAAATCTGGGTGCCGCACTGGCCTATTCGCCAACCAAGTTGCCGCCGCCCTTCCTGCCAAAATTGGCTTCTTCGCCCGATGAGGCGACTCTTCCGACTGCCCTTCTCGCCAAAATTGGCTCCTTCGCCCAATGTGGCGACTCTTCAGGCTTCAACATTGTCTTTGTCCCTTGCTCTAGGTTTCCCCTTCTACTTCTTGGGGTTAGAAATATTCTCACCAGAGCCAAGGCAGCATCGTCGCTAAGCGACAATCCCTCTTCATGGGTTAGACATATTCTCGCCGAAGCCAAGGCAGCATTGCCGCTGAGCGGCGATTCCTCTGCAATTTTCGATGGCCAAGAAAGTGTTTCTCTACGCCTCCTCTGA 1671 42.55 MSFPPWLHLIIFLSSLFIILKWKAAANKRKCNFPPSPPKIPIIGNLHQLGKLPHKSLWRLSQLYGPIMSLSLGRIEIIIISSVETARALLKNHDLQSCNRPQTHAIKKFSYNFLDIAFSPCSDYWREIRKICMLEFFSMKRVLSYEPIREQEVGLFIESISQSASCGAVVDLSEKSIALTTGVIFRIAFGKQFEGDGFHELISEVEALLGSYSASEFFPVPFVGEVFDWFSGRETRLERVFNEMNGLFQEVIDEHLCPQRPKPEQDDIIDVLLAISKNQVEPCSVVITHENIKAILFDIFLAGLDTSSITIVWAMAELAKNSKLMKKAQEEIRNYVGNKRKVTEKDVEELPYLKMIVKETLRLHPPAPLLPRETISHFKIEDYNFYPKTMVQVNVWAIGRDPTYWKDPEEFLPERFAESSIDYKGQLLRIFKIYLRNLGAALAYSPTKLPPPFLPKLASSPDEATLPTALLAKIGSFAQCGDSSGFNIVFVPCSRFPLLLLGVRNILTRAKAASSLSDNPSSWVRHILAEAKAALPLSGDSSAIFDGQESVSLRLL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6709254 6711608 - CmaCh18G007470.1 Cma18g00747 314085

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00747 556 PANTHER CYTOCHROME P450 71B16-RELATED 5 427 - -
Cma18g00747 556 SUPERFAMILY Cytochrome P450 34 422 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 Coils Coil 325 345 - -
Cma18g00747 556 PANTHER CYTOCHROME P450 71B11-RELATED 5 427 - -
Cma18g00747 556 PRINTS P450 superfamily signature 302 319 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 PRINTS P450 superfamily signature 355 366 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 PRINTS E-class P450 group I signature 179 197 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 PRINTS E-class P450 group I signature 291 308 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 PRINTS E-class P450 group I signature 61 80 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 PRINTS E-class P450 group I signature 311 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 PRINTS E-class P450 group I signature 354 372 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 PRINTS E-class P450 group I signature 394 418 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 Pfam Cytochrome P450 34 421 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00747 556 Gene3D Cytochrome P450 18 440 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00747 - - K01773 cmos:111449354 675.626
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00736 Cma-Chr18:6646569 Cma18g00747 Cma-Chr18:6709254 2.31E-112 dispersed
Cma18g00745 Cma-Chr18:6696086 Cma18g00747 Cma-Chr18:6709254 9.26E-69 dispersed
Cma18g00747 Cma-Chr18:6709254 Cma04g01787 Cma-Chr4:9010240 2.42E-123 dispersed
Cma19g00670 Cma-Chr19:7004603 Cma18g00747 Cma-Chr18:6709254 1.17E-69 dispersed
Cma18g00746 Cma-Chr18:6699586 Cma18g00747 Cma-Chr18:6709254 0 tandem
Cma18g00747 Cma-Chr18:6709254 Cma18g00748 Cma-Chr18:6718521 0 tandem
Cma07g00375 Cma-Chr7:1599828 Cma18g00747 Cma-Chr18:6709254 2.59E-66 transposed
Cma18g00747 Cma-Chr18:6709254 Cma04g01782 Cma-Chr4:8991584 5.34E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g616 . . . . . . . . . Cmo18g00744 . Cma18g00747 . . . . . Bhi07g01813 . . . . . . Cla05g02608 . . . . . . . . . . Lsi04g00623 Csa05g02272 Chy10g00836 Cme10g00596 Blo06g00842 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000114 2 12 3 1 0 7 0 7 6 6 11 9 15 7 3 22 9 4 0 10 11 2 0 8 13 10 6 17 8 7 216
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00747 Cma_Chr18 FPKM 0.760563 0.555879 2.260058 2.531575 8.317909 5.78954 9.947298 1.095973 1.388957 1.594942