Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00748 ATGTTTTTCCTCTCGTTCTTGAACTCTTTCTCAATTTCAATGTCGTTCCTTCATTTCCCTCCATGGCTTCATCTCATCATCTTCCTCTCTTCACTTTTCATCATTCTAAAATGGAAAGCAGCTGCAAATAAAAGAAAGTGTAATTTTCCCCCAAGTCCACCGAAAATTCCAATCATTGGAAACTTGCATCAACTCGGGAAGCTCCCACACAAATCTCTATGGCGCCTCTCTCAGCTTTACGGTCCTATTATGAGCCTCAGCTTAGGCCGTATAGAAATCATCATCATATCATCTGTCGAGACTGCTCGTGCCCTCTTAAAAATCCACGATCTTCAAAGTTGCAACAGACCACAAACACATGCTATCAAAAAATTCTCTTACAATTTCCTCGACATTGCGTTTTCACCTTATAGCGATTATTGGCGAGAGATACGCAAAATTTGTATGCTTGAGTTTTTCAGTATGAAGAGGGTGTTATCTTACAAACCCATTAGAGAGCAAGAAGTTGGTTTATTTATTGAATCAATTTCACAATCAGCTTCTTGTGGAGCTGTCGTTGATCTTAGTGAGAAGTCAATTGCTCTCACTGCTGGTGTTATATTTAGAATTGCATTTGGAAAGCAGTTTGAAGGGGATGGATTTCATGAGCTTATAAGTGAAGTTGAGGCCCTGTTGGGAAGCTATAGTGCTTCTGAGTTTTTTCCAGTTCCTTTCGTGGGAGAGGTATTTGATTGGTTTAGTGGTCGAGAAACTAGACTTGAAAGGGTTTTTAACGAGATGAATGGTTTGTTTCAAGAGGTGATTGATGAACATCTTTGTCCTCAGAGGCCTAAGCCAGAGCAAGATGATATCATTGATGTGCTTTTGGCTATTAGTAAAAACCAAGTTGAACCTTGCTCGGTTGTCATTACCCATGAAAACATCAAAGCCATTCTTTTTGACATATTTTTGGCAGGATTAGACACTAGTTCAATTACAATAGTTTGGGCAATGGCAGAACTCGCAAAAAACTCAAAATTGATGAAAAAAGCTCAAGAAGAAATCAGAAACTATGTGGGAAACAAACGAAAGGTAACAGAGAAAGACGTAGAAGAGCTTCCATATTTGAAAATGATAGTGAAAGAGACCCTAAGACTACATCCACCCGCACCTCTTCTTCTTCCAAGAGAAACCATTTCTCATTTCAAAATTGAAGACTATAATTTTTACCCGAAAACGATGGTTCAAGTGAACGTTTGGGCAATTGGACGAGACCCCACATACTGGAAAGACCCAGAAGAGTTCCTTCCAGAGAGATTTGCAGAGAGCTCGATTGATTACAAAGGACAACATTTTGAGTTATTGCCATTCGGGGCTGGTCGGAGGATATGTCCAGGATTGAATATGGGGGTGAAAACTGTGGAGTTAGCTTTAGCGAATCTTTTGTACCATTATGATTGGAAGCTGCCGAATGGGATGAAAGAGGAAGACTTGGACATGGAAGAGAATTCAGGTTTGAGTCTCACCATCTACAAAAAGTTGCCTCTCAAGCTTGTACCAATTTTATACCATCCATGA 1557 39.88 MFFLSFLNSFSISMSFLHFPPWLHLIIFLSSLFIILKWKAAANKRKCNFPPSPPKIPIIGNLHQLGKLPHKSLWRLSQLYGPIMSLSLGRIEIIIISSVETARALLKIHDLQSCNRPQTHAIKKFSYNFLDIAFSPYSDYWREIRKICMLEFFSMKRVLSYKPIREQEVGLFIESISQSASCGAVVDLSEKSIALTAGVIFRIAFGKQFEGDGFHELISEVEALLGSYSASEFFPVPFVGEVFDWFSGRETRLERVFNEMNGLFQEVIDEHLCPQRPKPEQDDIIDVLLAISKNQVEPCSVVITHENIKAILFDIFLAGLDTSSITIVWAMAELAKNSKLMKKAQEEIRNYVGNKRKVTEKDVEELPYLKMIVKETLRLHPPAPLLLPRETISHFKIEDYNFYPKTMVQVNVWAIGRDPTYWKDPEEFLPERFAESSIDYKGQHFELLPFGAGRRICPGLNMGVKTVELALANLLYHYDWKLPNGMKEEDLDMEENSGLSLTIYKKLPLKLVPILYHP 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6718521 6720261 - CmaCh18G007480.1 Cma18g00748 314086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00748 518 PRINTS P450 superfamily signature 318 335 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS P450 superfamily signature 371 382 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS P450 superfamily signature 448 457 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 Coils Coil 341 361 - -
Cma18g00748 518 Pfam Cytochrome P450 50 501 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 450 459 IPR017972 GO:0005506|GO:0016705
Cma18g00748 518 PRINTS E-class P450 group I signature 77 96 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS E-class P450 group I signature 195 213 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS E-class P450 group I signature 307 324 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS E-class P450 group I signature 327 353 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS E-class P450 group I signature 370 388 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS E-class P450 group I signature 411 435 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS E-class P450 group I signature 447 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PRINTS E-class P450 group I signature 457 480 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 SUPERFAMILY Cytochrome P450 50 513 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 Gene3D Cytochrome P450 34 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma18g00748 518 PANTHER CYTOCHROME P450 71B11-RELATED 32 515 - -
Cma18g00748 518 PANTHER CYTOCHROME P450 32 515 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01781 Cma18g00748 CCT
Cma04g01781 Cma18g00748 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00742 Cma-Chr18:6687410 Cma18g00748 Cma-Chr18:6718521 1.84E-111 dispersed
Cma18g00744 Cma-Chr18:6690065 Cma18g00748 Cma-Chr18:6718521 0 dispersed
Cma18g00746 Cma-Chr18:6699586 Cma18g00748 Cma-Chr18:6718521 3.02E-10 dispersed
Cma18g00748 Cma-Chr18:6718521 Cma18g00750 Cma-Chr18:6731507 1.24E-150 proximal
Cma18g00747 Cma-Chr18:6709254 Cma18g00748 Cma-Chr18:6718521 0 tandem
Cma18g00748 Cma-Chr18:6718521 Cma18g00749 Cma-Chr18:6724140 1.30E-68 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00748 - K01773 cmos:111449354 827.009