Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00751 ATGTCAATCGCTCAAGCACTTCCCCAAAGCTGCTACTCCGCCATCGCCAAGTTCCTTCGCCATCGTTCAACTGAGCGTTCATCTCTCTTTCACAACGGTCAAACAGTTTCGAGCTTCTGCAAATTCGGCTCCAATGGATACTTCGTAAACCGCCTCGTCTTTCGAGCTAGTATCACCAAGTGTGTCAAGGTTGGTTTAATTGATGAAGCTATCAGGATATTCGATGAAATGACTCAATCGAATTGCCCTGTAACGAGCAGAGACTACAATCGCTTTATTGGAGTTCTGATTAGCCGCTCGCGTTTCGATTTGGCCGAAAAATTGGCTTTAGAGTTTTTTAACGAAATGGTTTCGAAAGGAAGGGAACCTGATGTTGTAACATACACCATAATAGTTGATAGATTGTGCAAAGCCAAGCAATATGGCCAAGCTGTGGAGTTTTGGCGTTTTATGGTTCAGAAGGGGATTAGTCCAGACATGAAAGCCTGTACGGCTCTTGTTGTTGGGCTCTGCGATGGTGGGAAAGTTGATTTAGCATATGAACTTATGGTTGGTAAAATGAAGGGTCAGACGAAGTTCAACAATTTGATTTATAATTCTCTGATTAGTGGGTTTTGTAAAGCTGGGAGGATCTCTAAGGCACTGGCCCTCAAGTCATTTATGAGTAATAATGGTTGTGAGCCAGATTTGGTTACCTACAATATTTTGCTGAATTTTTTTTGCGATGGGCTTATGTTGGAGGATGCAGGGGAGTCGATGAAGAAGATGGAGAGGATAGGAATGGAGCCTGATGTGTACAGTTACAACCAACTTCTTAAGGGTCTTTGCAAGGCTAATCGGCTGGATAAAGCATATAGATTGATGAATAAAATGTGGGAGAAAGGGTTGTGTGACACTGTTTCATACAACACTTTGATAAGTGCACTATGCAAAGCATTGGCAACTAGAAAGGCATACAAGCTATTTGAGGAAATGGGCCAGAAAGGTATTGCTCCAGATGTGGGAACATTTGCAACTCTTATAAAAGCTTTTCTTAGAGAAGGAAGCTCCCATATAGCTAAGAGACTTCTTCATAAGATGACCGAGACAATTCTGTTACCTGATCACATATTTTATACAACGGTCATAGATTACCTTTGTAAGACGGGGAAGATTGAGATGGCTCAAGGCGTCTTTCATGACATGATAGAGATAGGAATCTCCCCTGATGTGGTTTCATATAATGCTCTTATAAATGGGCTTTGCAAGGCCTTTAAAGTTCATGAGGCCATGTTACTGTATGAAGAAATGCAAATGAGAGGATGCTATCCTGACGAGGTCTGGGATCAGATGATGGAGAAGGGCTATACGCTTGACAGATTTCTATCCGAGGCTCTTATCAATGCCATTCAGTCGAGGGATGCTGTGGGGCATTTTTCCGCTATCAAGACATGGAGGCGCTTAGCTTTCCAGGCATTGCACCTGTCTTGGAGAAATTTCCCTTCTGATACAGTGTCCAAATTTCTTATACGACCCTATCTTCGGATCGTGCTCATTGCAAAAGTCAGGACTAGGAAGCCCTGCTTAGCATCGAAAACTACCGGGATCGAGGATTGTATTTCTCATCACATTGATGGCATAAGAACGAACACGTTCAAGGCAATGTGA 1647 42.74 MSIAQALPQSCYSAIAKFLRHRSTERSSLFHNGQTVSSFCKFGSNGYFVNRLVFRASITKCVKVGLIDEAIRIFDEMTQSNCPVTSRDYNRFIGVLISRSRFDLAEKLALEFFNEMVSKGREPDVVTYTIIVDRLCKAKQYGQAVEFWRFMVQKGISPDMKACTALVVGLCDGGKVDLAYELMVGKMKGQTKFNNLIYNSLISGFCKAGRISKALALKSFMSNNGCEPDLVTYNILLNFFCDGLMLEDAGESMKKMERIGMEPDVYSYNQLLKGLCKANRLDKAYRLMNKMWEKGLCDTVSYNTLISALCKALATRKAYKLFEEMGQKGIAPDVGTFATLIKAFLREGSSHIAKRLLHKMTETILLPDHIFYTTVIDYLCKTGKIEMAQGVFHDMIEIGISPDVVSYNALINGLCKAFKVHEAMLLYEEMQMRGCYPDEVWDQMMEKGYTLDRFLSEALINAIQSRDAVGHFSAIKTWRRLAFQALHLSWRNFPSDTVSKFLIRPYLRIVLIAKVRTRKPCLASKTTGIEDCISHHIDGIRTNTFKAM 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6738908 6743571 - CmaCh18G007510.1 Cma18g00751 314089

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00751 548 Pfam PPR repeat family 367 416 IPR002885 -
Cma18g00751 548 Pfam PPR repeat family 197 241 IPR002885 -
Cma18g00751 548 Pfam PPR repeat family 298 345 IPR002885 -
Cma18g00751 548 Pfam PPR repeat family 123 171 IPR002885 -
Cma18g00751 548 Pfam PPR repeat 260 291 IPR002885 -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 194 228 IPR002885 -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 50 84 IPR002885 -
Cma18g00751 548 Gene3D Tetratricopeptide repeat domain 188 295 IPR011990 GO:0005515
Cma18g00751 548 Gene3D Tetratricopeptide repeat domain 364 482 IPR011990 GO:0005515
Cma18g00751 548 Gene3D Tetratricopeptide repeat domain 12 187 IPR011990 GO:0005515
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 264 294 IPR002885 -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 124 158 IPR002885 -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Cma18g00751 548 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 44 107 - -
Cma18g00751 548 Pfam PPR repeat 58 82 IPR002885 -
Cma18g00751 548 Gene3D Tetratricopeptide repeat domain 296 363 IPR011990 GO:0005515
Cma18g00751 548 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 108 468 - -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 229 263 IPR002885 -
Cma18g00751 548 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Cma18g00751 548 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 108 468 - -
Cma18g00751 548 PANTHER MEMBRANE-ASSOCIATED SALT-INDUCIBLE PROTEIN-LIKE 44 107 - -
Cma18g00751 548 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Cma18g00751 548 TIGRFAM PPR: pentatricopeptide repeat domain 266 296 IPR002885 -
Cma18g00751 548 TIGRFAM PPR: pentatricopeptide repeat domain 61 85 IPR002885 -
Cma18g00751 548 TIGRFAM PPR: pentatricopeptide repeat domain 197 229 IPR002885 -
Cma18g00751 548 TIGRFAM PPR: pentatricopeptide repeat domain 126 159 IPR002885 -
Cma18g00751 548 TIGRFAM PPR: pentatricopeptide repeat domain 372 404 IPR002885 -
Cma18g00751 548 TIGRFAM PPR: pentatricopeptide repeat domain 405 439 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00751 - - - cmax:111466483 774.622
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma18g00751 Cma-Chr18:6738908 Cma19g00618 Cma-Chr19:6694118 4.15E-23 dispersed
Cma18g00751 Cma-Chr18:6738908 Cma05g00560 Cma-Chr5:2744941 1.02E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g620 . . . . . . Bma14g01828 . . Cmo18g00756 . Cma18g00751 . Car18g00685 . Cpe09g00548 . Bhi07g01807 . . . . . . Cla05g02598 Cam05g2789 Cec05g2827 Cco05g2859 Clacu05g2791 Cmu05g2639 Cre05g2755 Cone13ag1092 . . . Lsi04g00608 Csa05g02277 Chy10g00843 Cme10g00587 . . Bda07g01644 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006460 1 3 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 0 1 1 1 1 1 1 1 1 0 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00751 Cma_Chr18 FPKM 1.049735 0.995306 1.127649 1.347194 2.000796 2.391435 2.923088 2.899119 2.520216 2.46304