Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00752 ATGGATGAAAAGAGGGTGGCCGGTTGTACTCGTAACATGTTTTTCCGGTCAGTTTCGTGGTCGGACCGGTCACCGTCGAAGCCCCGTGATAATCGGAGCTTAGTGTCTAATAGTAATAAAGCTCGGTTATGTTTGCCACCGTTGCAGCCACTTTCAATCAGTCGCCGGAATGTTGAGGAGTGGCCACCGGCGGGTTGTGATGATCTTGGCGTTTGGCCAAACCCAGAAACTCCGAGAGAGGTTGTTGATAATAAGCCTACGACGGAATTTGAGTTTAAGAAGGATAAACTTGCGTTTTTTGATAAGAAATGCTCCAAAATTCTTGATCATGTGTACTTAGGGAGTGATTCTGTGGCTAAGAATCGAGAGGTTTTGAGGCAGAATGGGATCACTCATGTGTTGAATTGTGTTGGGTTTGTGTGTCCTGAGTATTTCAAGGGTGAATTTGTTTACAAAACTCTTTGGTTGAAAGATACTCCTTCAGAGGATATTACTAGCATTCTCTATGATGTATTTGATTACTTTGAAGATGTTTGTGAGCACGGTGGTCGGGTTTTCGTGCATTGTTTTCAAGGAGTATCTCGGTCGACTTCTCTTGTAATAGCATACCTTATGTGGAAGGAAGGTCGGAGCTTTCAGGATGCTCTTCAATCGGTAAAAGCTGCTCGAGGGGTGGCTAATCCGAACTTGGGGTTTGCTTGTCAATTATTGCAGTGCCAGAAGCGAGTACATGCCCTGCCTGCTAGCCCGGATTCGACTTTGAGGATGTATAGGATGGCTCCTCATTCATCTTATGATCCACTTCATCTTGTACCTAAGATGTTGAACACTCCGACTGTTCAAGGGCTTGATTCTCGTGGGGCATTTGTCGTGCACGTTCCTTCAGCTGTCTATGTCTGGGAGGGGGAGAAGTGCGACTCTGTGATGTTGAACTCGGCTAAGACAGCAGCGTCGCAGATCATTCGATACGAAAAGGCAAAAGGCCCCATACTTAGCATCAAAGAAGGTGATGAACCATTGGGATTTTGGAAAGCTTTGATGGATGGCCAAAATTTGGCTGATAATTCCAAAGGGCAAGTTCGGAAGAAGGTTGAGGAGTATAATCCAGATTTCGAAATTTTTCACAGGGCGATTTCGGGTGGGGTTGTTCCACCTTTCGATATATCTAATACCGATTCGGAAAATTACCTTCCCGTTAGACAAAATGGGTGGGACAAGACCAAAAGGAAGATCGAAAACGAAACTACAGAAGATATTGCGACATCCTTTTCAGAATTGGATTGTGATACTAAAGGAGCATTTGATGATATGGACATGACGACTGCAAATATTGATGAAGATCCAAATGCACCTGTTTCTTCAATTGACCTTGCATCTCCACCACTTTCACCCACAGCCTATTTGTGTGACTCACCTGAATCTTTTGACTGTTTTCCAGCTGGTAGCTTGGATCAGGAAGTAGAAAATTCGAAGGCTAGATCGATCCCAGACGATCCTTTATCGTTACCGATTCATCCTCTGGGATCACCCGATTCATTTTCGAGTTTTCAAGGAGGGCCTAGTCCAAAGTTCGGCACCAAATCCCCTTCACTCTCTCCTTCTACATCTGATAACTCGAGTTCATTTACCTTTTCACCATCATCGTCTAATTGGTCCGACTTATCTTATATGTCTTCTCGGCAACCATCACCATCCGACATGGATTCAGTACATCCAGCTGTTAAAAACTCTTCCATCATAGATAATTTTTGTTTACACCACAAAGAAACTCATCCTATCTTTGTAGAGTCCTTTCCCTCTTATCCCATGTTAAGGGCAGGAAACACGAATTTGAAATCAAGAGGAGCCTCCCCTTCAATTGCAGAGCGTCGAGGGAGTCATCCTCCACCTGGGATGTTGCTGCCTTCCATTGAAGAAGCCTGCAAGGTTCAGAGGAAAATAGTTCGGTCATCATCATTTTCTTTGCTCAACTTAGACGACGATGCATTGGAGATAGCAGGGTGCAGCCAATCCAAGAATAAAAGCAGTAGTAAAGATATAAATTTGGACATTGATAGATTTGGGGCTTGCACTGAATTAGAATACAAGTTTGCAGAAGCAGAAACTCCAATCTTTTACCAGTGGCCTTCAATGAATACAGTGGAGATCAATCAATTCGGGAATCTCAATTCTAGATCAGTGTATATATTGTTTGCTCCAGATACAAATTTGGATTCAAACGGCTATAACAACTTATTTATCTGGCTGGGGAGTAAAGTTTTGCATAAAAACGATGATGGTCAACTAATGAGCGACGACAATGAAGATGGACATCTTCACTGGGAGATGATCGGACATATATTCATTAATAATAAGGGAATTCCTAGAGATACCCAAATAGAGATAATAAGAGAAGGAGAGGAGCCAGAGAAGTTCCTTGCACATATAAGCAATTCATTACCTCAAAAAACAGAATGTGTTGATCTGTGGTCGGTGAAGACTTGA 2484 43.0 MDEKRVAGCTRNMFFRSVSWSDRSPSKPRDNRSLVSNSNKARLCLPPLQPLSISRRNVEEWPPAGCDDLGVWPNPETPREVVDNKPTTEFEFKKDKLAFFDKKCSKILDHVYLGSDSVAKNREVLRQNGITHVLNCVGFVCPEYFKGEFVYKTLWLKDTPSEDITSILYDVFDYFEDVCEHGGRVFVHCFQGVSRSTSLVIAYLMWKEGRSFQDALQSVKAARGVANPNLGFACQLLQCQKRVHALPASPDSTLRMYRMAPHSSYDPLHLVPKMLNTPTVQGLDSRGAFVVHVPSAVYVWEGEKCDSVMLNSAKTAASQIIRYEKAKGPILSIKEGDEPLGFWKALMDGQNLADNSKGQVRKKVEEYNPDFEIFHRAISGGVVPPFDISNTDSENYLPVRQNGWDKTKRKIENETTEDIATSFSELDCDTKGAFDDMDMTTANIDEDPNAPVSSIDLASPPLSPTAYLCDSPESFDCFPAGSLDQEVENSKARSIPDDPLSLPIHPLGSPDSFSSFQGGPSPKFGTKSPSLSPSTSDNSSSFTFSPSSSNWSDLSYMSSRQPSPSDMDSVHPAVKNSSIIDNFCLHHKETHPIFVESFPSYPMLRAGNTNLKSRGASPSIAERRGSHPPPGMLLPSIEEACKVQRKIVRSSSFSLLNLDDDALEIAGCSQSKNKSSSKDINLDIDRFGACTELEYKFAEAETPIFYQWPSMNTVEINQFGNLNSRSVYILFAPDTNLDSNGYNNLFIWLGSKVLHKNDDGQLMSDDNEDGHLHWEMIGHIFINNKGIPRDTQIEIIREGEEPEKFLAHISNSLPQKTECVDLWSVKT 827
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6746297 6749995 + CmaCh18G007520.1 Cma18g00752 314090

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00752 827 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 98 244 IPR029021 -
Cma18g00752 827 MobiDBLite consensus disorder prediction 508 572 - -
Cma18g00752 827 CDD DSP 104 238 - -
Cma18g00752 827 MobiDBLite consensus disorder prediction 488 572 - -
Cma18g00752 827 PANTHER MKPA PROTEIN 11 806 - -
Cma18g00752 827 Gene3D Severin 706 809 IPR029006 -
Cma18g00752 827 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 11 806 - -
Cma18g00752 827 MobiDBLite consensus disorder prediction 609 630 - -
Cma18g00752 827 Pfam Dual specificity phosphatase, catalytic domain 111 241 IPR000340 GO:0008138|GO:0016311
Cma18g00752 827 SMART dsp_5 103 242 IPR020422 GO:0006470|GO:0008138
Cma18g00752 827 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 162 223 IPR000387 GO:0016311|GO:0016791
Cma18g00752 827 Gene3D Severin 254 354 IPR029006 -
Cma18g00752 827 ProSitePatterns Tyrosine specific protein phosphatases active site. 187 197 IPR016130 GO:0016311|GO:0016791
Cma18g00752 827 Gene3D Protein tyrosine phosphatase superfamily 78 245 IPR029021 -
Cma18g00752 827 ProSiteProfiles Dual specificity protein phosphatase domain profile. 103 245 IPR020422 GO:0006470|GO:0008138
Cma18g00752 827 SUPERFAMILY Actin depolymerizing proteins 708 814 - -
Cma18g00752 827 SUPERFAMILY Actin depolymerizing proteins 250 349 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00752 - - - csv:101203370 1294.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01778 Cma18g00752 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00020 Cma-Chr10:79961 Cma18g00752 Cma-Chr18:6746297 2.84E-19 dispersed
Cma18g00752 Cma-Chr18:6746297 Cma19g01054 Cma-Chr19:8886613 5.24E-08 dispersed
Cma08g01167 Cma-Chr8:7179293 Cma18g00752 Cma-Chr18:6746297 4.78E-24 transposed
Cma18g00752 Cma-Chr18:6746297 Cma04g01778 Cma-Chr4:8943123 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g621 . . . . . . . Bma15g00226 . Cmo18g00757 . Cma18g00752 . Car18g00686 . Cpe09g00547 Cpe01g01575 Bhi07g01805 . . . . . . Cla05g02597 Cam05g2788 Cec05g2826 Cco05g2858 Clacu05g2790 Cmu05g2638 Cre05g2754 Cone13ag1091 Cone19ag1080 Cone8ag0701 Cone12ag0682 Lsi04g00606 Csa05g02278 Chy10g00844 Cme10g00586 . . . . . . . . . . . Cma04g01778 . Car04g01803 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007047 1 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00752 Cma_Chr18 FPKM 7.820158 10.431611 6.460119 5.481498 1.489037 0.981648 1.55676 3.604581 2.879186 3.295449