Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00758 ATGGACTCCCATTCCTTAATGTTTGCTGTCTTGGTACTGTCACTCACTCCATGCTCTGTCCTGGCCCGAAAGCCCTGCAATTTCCCGGCCATTTTCAATTTCGGCGACTCCAATTCCGACACCGGCGGCCTCTCCGCCCTCTTATGGCAGGCCCCTCCACCCAATGGCATGTCCTATTTCCACGCCCCCGCCGGCCGATACTGCGACGGCCGCCTCATCGTTGATTTCATGGCCAAAAGCTTTGGATTGCCTTATCTTAGTGCTTATCTCAATGCATTGGGAGCCAATTTCAGCCACGGAGCCAATTTCGCCACTGCTGCCTCAAGCATTAGGCCACAAACCATAACTCTTATGCAGCCGGGTGGTGTTAGCCCCATTTCTCTTGATGTTCAATACAATGAATTCTATGACTTTCGTCGTAGATCCCAGACCGTTCGTAATCGATTGGGTGGTTTTTTTAAGTCCTTATTGCCGAAGGAAACGAGCTTCGGTCGGGCTTTGTACACGTTTGATATTGGTCAGAATGATTTGACGAGTGGTTACTTCTCGAATATGACTGTCGAACAAGTTCGAGATTACATCCCTCAAGTGCTCCATCAGTTCTCCACTATTGTCAAGTGGGTACACAGTCAAGGAGGAAGGTTCTTCTGGATCCATAACACAGGCCCGGTGGGGTGCCTTCCATATGTATTGAGTCGAATGCCTGTTTCACCCTCCGACTACGACCGATATGGATGTGCCATTCCTTTCAATGACTTGGCTCAAACTTTCAACTGCGGCCTGAAGAAAGTTGTGGCTGAGCTTCGCGCAGCTTTACCCGATGCCACACTCACATACGTCGATGTTTACTCTCTCAAATACACCCTCGTTAGCCAACATAAAAAACATGGGTTCGAGTTTCCATTGAGAACGTGTTGTGGGCATGGTGGAAAGTATAACTTCAACGTGAAGCTTGGATGTGGAGGAACGAAACGGGTCAATGGGAAGGATGTTTTGATTGGAAAGGCTTGCAAGAAGCCAGAAGTGTATGTGAATTGGGATGGTATACATTATACGGAGGCAGCTAACAAATGGATCTTCAATAAGATCAAAACCGGTGCTTATTCTGATCCACCAATTCCTTTGGAGATGGCTTGTCACAGAGACTAA 1149 47.95 MDSHSLMFAVLVLSLTPCSVLARKPCNFPAIFNFGDSNSDTGGLSALLWQAPPPNGMSYFHAPAGRYCDGRLIVDFMAKSFGLPYLSAYLNALGANFSHGANFATAASSIRPQTITLMQPGGVSPISLDVQYNEFYDFRRRSQTVRNRLGGFFKSLLPKETSFGRALYTFDIGQNDLTSGYFSNMTVEQVRDYIPQVLHQFSTIVKWVHSQGGRFFWIHNTGPVGCLPYVLSRMPVSPSDYDRYGCAIPFNDLAQTFNCGLKKVVAELRAALPDATLTYVDVYSLKYTLVSQHKKHGFEFPLRTCCGHGGKYNFNVKLGCGGTKRVNGKDVLIGKACKKPEVYVNWDGIHYTEAANKWIFNKIKTGAYSDPPIPLEMACHRD 382
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6769353 6771104 + CmaCh18G007580.1 Cma18g00758 314096

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00758 382 Gene3D SGNH hydrolase 19 366 IPR036514 -
Cma18g00758 382 PANTHER BNAA06G32900D PROTEIN 24 381 - -
Cma18g00758 382 Pfam GDSL-like Lipase/Acylhydrolase 31 363 IPR001087 GO:0016788
Cma18g00758 382 PANTHER ZINC FINGER FYVE DOMAIN CONTAINING PROTEIN 24 381 - -
Cma18g00758 382 CDD SGNH_plant_lipase_like 29 363 IPR035669 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00758 - - - bhj:120080807 656.751
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01158 Cma-Chr5:8999489 Cma18g00758 Cma-Chr18:6769353 7.65E-103 dispersed
Cma18g00758 Cma-Chr18:6769353 Cma18g00759 Cma-Chr18:6772932 0 tandem
Cma17g00465 Cma-Chr17:2813467 Cma18g00758 Cma-Chr18:6769353 1.85E-101 transposed
Cma14g00678 Cma-Chr14:3446008 Cma18g00758 Cma-Chr18:6769353 4.93E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g630 . . . . . . . . . Cmo18g00762 . Cma18g00758 . Car18g00691 . Cpe09g00539 . . . . . . . . . . . . . . . . . . . . Csa05g02281 Chy10g00847 . Blo06g00847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004340 1 1 1 0 1 1 3 1 1 1 1 1 2 1 1 3 1 4 2 1 1 1 1 1 1 1 1 1 1 6 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00758 Cma_Chr18 FPKM 0.942649 1.753476 9.767185 10.982873 34.495537 35.945839 32.985168 0.285048 0.389923 0.520406