Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00782 ATGCATCGTAATCCCACGCCCAAACAGCACGTGAAGGATCCATTAGTGTCGCTCTTTGCTTACGTGGCCCTCTCAAATCCCTCCACCTCGTCATTTCTCGAGAATTGGATTGATCGATATCCAGCTTTTCTTTGCAGACGAAGTGCATCAGCGAATATGAGTAATTCCATCAATCAGAATATACTCCATCAGAGTTTGCTTCGTCATACAGTTTTAGATAACCAATATAAATTGAATCCTTCCGGCACCTATAAGAATACTTTATTTCAAGCGGCAATACCCAATCAAGTCCCAGCACAGCATTGGAAATCTCCTATGTCCACGAAGTTTTTAGGGAGCAGTCTAAACGTTCAAAAACCAAGGATGGCCTCTGGAACAAGTCGCCGCAGATGTCCTGTTAATCCTCATGCGGTATTAACCACGGATCCTGCTTCCGAGCTTGCTGGGAAATTCAAACTGGATGAGAATATTGAACTGCAGGTTGATGTGAGTGTCCCTACTTCAGGATCCACTAGACGTGTAAATATTCTGGTCACAAACATTAGTGGCTCCCTTCTGCTTCATTGGGGTGCAATAAGTGATATAAAAGACAAATGGGTGCTTCCATCCCGTTGCCCAGAGGGAACTCAAGCATATAAGAACAGAGCTCTTAGAACGCCTTTTCAGAAATCTGGTTCCAATTCTACCCTAACAATTGAGGTTGACGACCCTGCAATAGAAGCGATAGAGTTTCTTTTACTCGATGAAGCTCGTAATAAGTGGTATAAGAACAATGACAAAAACTTTCATGTTGCGTTATGGGTGAAAGAGAAGTTTATTTCAGATGTTTCAGTTCCTGAAGAACTTGTACAAATTCAAGCATATTTGAGATGGGAAAGAAGGGGCAAACAGATGTATACTCCACAACAGGAGCAGGAGGAGTATGAAGCAGCTCGTGCTGAGTTATTGCAAGAATTAGCCAGGGGTGATACCATACAAGATCTCAGAGCTAGACTGACCAAAAAAAATGATGGCAGTGAAACAGTGGAGCTATCCACTCCCAAAGAAAAGACAATTCCTGATGAACTTGTTCAAGTTCAAGCTTTTATACGTTGGGAGAAAGCAGGGAAACCCAACTACTCTGCTGAGGAGCAACATAGGGAATTTGAAAAAGCAAGGGAAGATTTGCTGTCAGAGCTAACTAAAGGTGCAACTATTGATGAGATTCGGAAGAAACTTTCCAAAGGAGAGATCAAAACTGAAGTAGCAAAGCAGTTTCAGAATAAAAAGTACTTTACAGTAGATAAAATTCATCGCAAGAAGAGGGACTTGGTGCAACTTGTAAGTAGATATGCTCCTCAACCTATAGAAGAAACATACATAGATAAGCCGAAAGCCTTGACGGAAGTTGAGCAATTTGCGAAGTTAAAGGAGGAGCAGGATGGTGGAGATGTTATAAACAAAATCATCTACAAGCTTGGTGACAAGGATCTTCTGGTACTTGTAACAAAAAATGCTAGCAAGACGAAGGTTTATCTGACTACAGATTTACAGGAGCCAGTTACTCTTCACTGGGGTTTGTCTAAAACAAATGCTGGCGAGTGGCTGACACCACCTCCTGATGTACTTCCATTGGGTTCAGTTCCATTGAGCCAGGCAGCTGAAACACAATTTATATTCAACACTGATGATTCCAGTCTAAAGGTCCAATATTTAGAAATCTTGATTGAAGAGGATGGTTTTGTGGGAATGCCATTTGTTCTTCAGTCCTCTGGAAATTGGATCAAGAACAAAGGTTCGTCAGATTTTTATGTTGCCTTTGCTGTCCAACCAAAGAAAGTGCGAAAGGTTACTGAGGGTGGCAAAGGTACTGCAAAGTCATTGTTGGATAATATAGCAGAACTGGAGAGTGAGGCAGAAAAATCCTTCATGCATCGATTTAACATTGCAGCTGACTTGATGGGTCAAGCTAAAGATGCTGGTGAATTGGGCCTTGCAGGGATCTTGGTGTGGATGAGATTTATGGCAACAAGGCAGCTTATATGGAATAAAAATTATAATGTGAAACCACGTGAAATCAGTAAAGCACAAGACAGACTCACAGATTTGTTAGAGAGTATTTATGCAAGCCATCCACAATATAGGGAGCTTTTACGGATGATTATGTCTACTGTTGGACGAGGTGGTGAAGGAGATGTTGGGCAGAGAATTCGGGATGAAATTTTAGTCATTCAGAGAAACAATGATTGCAAAGGAGGAATGATGGAAGAATGGCATCAGAAATTGCATAATAATACTAGCCCGGATGATGTAGTTATCTGTCAGGCATTAATCGATTACATTAATAGTAACTTTGATATTGGCGTTTACTGGAAAACTTTGAATGAGAATGGAATCACAAAAGAACGACTTCTAAGCTATGATCGTGCAATCCATTCTGAGCCACATTTTAGGGCAGATCAGAAGGATGGTCTTTTGCGTGATCTAGGAAACTACATGAGAACGCTGAAGGCAGTTCATTCAGGTGCAGATCTAGAATCTGCAGTTCAAAACTGCTTGGGCTATAGATCTGAGGGTCAAGGATTCATGGTTGGGGTGCAGATAAATCCTATTTCTGGTTTACCATCTGGATTTACGGATTTGCTGCAATTTGTTTTAGAAAATATTGAAATCAAGAATGTTGAACCACTTCTTGAGGGCTTGCTTGAAGCTCGTCAAGAGCTACATCCTTTGCTTCTCAAACCTCGTGACCGTCTAAGGGATCTCTTATTTTTGGATATTGCCCTCGATTCTGCTGTTAGGACTGCTGTTGAGAGGGGTTACGAGGAGCTAAATACTGCAGGACCGGAGAAAATTATGTACTTCATCACTCTCGTTCTGGAGAATCTTGCCCTATCATCAGATGATAATGAGGATTTCATCTACTGCTTGAAGGGATGGGATCTTGCATTGAACCTCACAAGAAGTAAAAAGGAACATTGGGCATTATATGCAAAGTCTGTTCTTGATAGAACCCGCCTTGCACTTGCAAACAAGGCAGAAGCATACCATCGCATCCTGCAGCCATCTGCTGAGTACTTGGGATCACTGCTTGGAGTAGAGGAATGGGCTGTTGACATATTTACCGAAGAAATCATCCGTTCTGGATCAGCTTCCTCTTTATCCGCACTTCTAAATAGACTTGATCCTGTTTTGCGGACAACTGCTAACCTGGGGAGCTGGCAGATTATTAGCCCGGTTGAAGCTGTTGGTTATGTGGTTGTTGTGGATGAGTTGCTTACCGTTCAGAATAAATCATATGAGAAGCCAACAATTCTAGTCGCTAACCGAGTAAAAGGTGAGGAAGAAATTCCAGATGGTACCGTTGCTGTGTTGACGCCTGACATGCCAGATGTTCTATCTCATGTTTCTGTTCGAGCAAGAAATGGGAAGGTTTGCTTTGCAACATGCTTTGATTCAAGTATTCTTTCCGACCTTCAAGTTAAAGAAGGGAAGTTATTGCGTATAAAGCCGACATCTGCTGATATTGTATATAGCGAGGTAAATGAGAATGAGGTACCAGATGCAAGTTCCATCCACGAAAATGATGGTGTTCCTTCAACCGTAACTCTCGTCAGAAAGCACTTTGTTGGCAAATATGCCATTGTATCTGAAGAGTTCAAGAGTGAAATGGTGGGAGCAAAATCACGTAATATTTCTTACCTGAAAGGAAAAGTGCCATCGTGGGTTGGGATCCCCACCTCAGTTGCCCTTCCATTTGGAGTTTTTGAAGAAGTTTTGTCTGAAGGATCAAATAAGGCGGTGGCTGAAAAGATTCAAGATTTGAAGATTAAGTTAGGAGAAGGGGAGTTCAGTGCTCTAAAGGAGATTCGCGAGACAGTCCTACAGTTGGCAGCCCCCACTCAATTGGTGCTAGAGTTAAAATCTAAGATGAAAAGTTCGGGAATGCCCTGGCCTGGTGATGAAGGTGAGGAGCGATGGGCGCAAGCATGGATGGCTATAAAGAAGGTCTGGGCTTCAAAGTGGAACGAGAGAGCATACTTCAGCACAAGAAAAGTGAAATTAGATCACGAATATCTCTGCATGGCTGTCCTTGTTCAGGAAATCATTAATGCTGACTATGCATTTGTTATCCATACAACCAATCCATCTTCTGGAGACTCGTCTGAAATATACGCAGAGGTTGTGAAGGGACTTGGAGAAACTCTAGTAGGAGCATATCCAGGACGTGCTTTGAGCTTTGTATGCAAGAAAAATGACTTAAATACTCCCAAGGTGCTGGGTTACCCAAGCAAGCCCATTGGCCTGTTCATTAGACGATCCATTATTTTTCGATCGGATTCCAATGGCGAAGACCTGGAAGGATATGCTGGGGCCGGTCTCTACGACAGCGTGCCGATGGACGAAGAAGAGAAGGTTGTGCTAGATTACACGACGGATCCGCTCATTATGGACGACAACTTTAGACAGTCGATTCTGTCTAGCATTGCTCGTGCAGGAAATGCAATTGAGGAGCTTTATGGATCTCCTCAAGACATTGAAGGTGTGATTAGAGATGGGAAAGTATATGTCGTCCAAACAAGACCCCAGATGTAA 4575 42.47 MHRNPTPKQHVKDPLVSLFAYVALSNPSTSSFLENWIDRYPAFLCRRSASANMSNSINQNILHQSLLRHTVLDNQYKLNPSGTYKNTLFQAAIPNQVPAQHWKSPMSTKFLGSSLNVQKPRMASGTSRRRCPVNPHAVLTTDPASELAGKFKLDENIELQVDVSVPTSGSTRRVNILVTNISGSLLLHWGAISDIKDKWVLPSRCPEGTQAYKNRALRTPFQKSGSNSTLTIEVDDPAIEAIEFLLLDEARNKWYKNNDKNFHVALWVKEKFISDVSVPEELVQIQAYLRWERRGKQMYTPQQEQEEYEAARAELLQELARGDTIQDLRARLTKKNDGSETVELSTPKEKTIPDELVQVQAFIRWEKAGKPNYSAEEQHREFEKAREDLLSELTKGATIDEIRKKLSKGEIKTEVAKQFQNKKYFTVDKIHRKKRDLVQLVSRYAPQPIEETYIDKPKALTEVEQFAKLKEEQDGGDVINKIIYKLGDKDLLVLVTKNASKTKVYLTTDLQEPVTLHWGLSKTNAGEWLTPPPDVLPLGSVPLSQAAETQFIFNTDDSSLKVQYLEILIEEDGFVGMPFVLQSSGNWIKNKGSSDFYVAFAVQPKKVRKVTEGGKGTAKSLLDNIAELESEAEKSFMHRFNIAADLMGQAKDAGELGLAGILVWMRFMATRQLIWNKNYNVKPREISKAQDRLTDLLESIYASHPQYRELLRMIMSTVGRGGEGDVGQRIRDEILVIQRNNDCKGGMMEEWHQKLHNNTSPDDVVICQALIDYINSNFDIGVYWKTLNENGITKERLLSYDRAIHSEPHFRADQKDGLLRDLGNYMRTLKAVHSGADLESAVQNCLGYRSEGQGFMVGVQINPISGLPSGFTDLLQFVLENIEIKNVEPLLEGLLEARQELHPLLLKPRDRLRDLLFLDIALDSAVRTAVERGYEELNTAGPEKIMYFITLVLENLALSSDDNEDFIYCLKGWDLALNLTRSKKEHWALYAKSVLDRTRLALANKAEAYHRILQPSAEYLGSLLGVEEWAVDIFTEEIIRSGSASSLSALLNRLDPVLRTTANLGSWQIISPVEAVGYVVVVDELLTVQNKSYEKPTILVANRVKGEEEIPDGTVAVLTPDMPDVLSHVSVRARNGKVCFATCFDSSILSDLQVKEGKLLRIKPTSADIVYSEVNENEVPDASSIHENDGVPSTVTLVRKHFVGKYAIVSEEFKSEMVGAKSRNISYLKGKVPSWVGIPTSVALPFGVFEEVLSEGSNKAVAEKIQDLKIKLGEGEFSALKEIRETVLQLAAPTQLVLELKSKMKSSGMPWPGDEGEERWAQAWMAIKKVWASKWNERAYFSTRKVKLDHEYLCMAVLVQEIINADYAFVIHTTNPSSGDSSEIYAEVVKGLGETLVGAYPGRALSFVCKKNDLNTPKVLGYPSKPIGLFIRRSIIFRSDSNGEDLEGYAGAGLYDSVPMDEEEKVVLDYTTDPLIMDDNFRQSILSSIARAGNAIEELYGSPQDIEGVIRDGKVYVVQTRPQM 1524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6913247 6925552 - CmaCh18G007820.1 Cma18g00782 314120

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00782 1524 PANTHER ALPHA-GLUCAN WATER DIKINASE 1, CHLOROPLASTIC-RELATED 349 1524 - -
Cma18g00782 1524 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 1215 1523 - -
Cma18g00782 1524 Gene3D - 1210 1363 IPR013815 GO:0005524
Cma18g00782 1524 PANTHER ALPHA-GLUCAN WATER DIKINASE 1, CHLOROPLASTIC 107 341 - -
Cma18g00782 1524 Pfam Pyruvate phosphate dikinase, AMP/ATP-binding domain 1323 1523 IPR002192 GO:0005524|GO:0016301|GO:0016310
Cma18g00782 1524 PANTHER ALPHA-GLUCAN WATER DIKINASE 1, CHLOROPLASTIC 349 1524 - -
Cma18g00782 1524 Gene3D - 1364 1523 - -
Cma18g00782 1524 PANTHER ALPHA-GLUCAN WATER DIKINASE 1, CHLOROPLASTIC-RELATED 107 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00782 K08244 R1; alpha-glucan, water dikinase [EC:2.7.9.4] - csv:101218978 2563.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma14g01462 Cma-Chr14:11116303 Cma18g00782 Cma-Chr18:6913247 5.37E-36 dispersed
Cma18g00782 Cma-Chr18:6913247 Cma18g01172 Cma-Chr18:9385903 2.70E-07 dispersed
Cma18g00782 Cma-Chr18:6913247 Cma06g01666 Cma-Chr6:10293822 1.05E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g644 . . . . . . Bma14g01813 . . Cmo18g00786 . Cma18g00782 . Car18g00712 Sed02g0999 Cpe09g00517 . Bhi07g01760 Tan04g1274 Cmetu10g1422 Lac13g0174 Hepe10g1614 . . Cla05g02568 Cam05g2753 Cec05g2786 Cco05g2825 Clacu05g2754 Cmu05g2605 Cre05g2720 Cone13ag1057 Cone19ag1047 . . Lsi04g00572 Csa05g02313 Chy10g00882 Cme10g00548 . Blo11g01059 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011444 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00782 Cma_Chr18 FPKM 14.235514 15.00937 75.061096 78.119858 39.864807 40.095253 42.150013 46.907181 41.663712 42.446545