Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00787 ATGGAAGAAATGTACGGTTTGCAATCGACGGCGGAGTATTCTGATAAGGCGTTGATGTCACCGGAGAATCTGATTCTGCCTCCGGATTATCAGAGCCTACTGGTTACTTCTGGAGAGTTTCGCGATCGGATTCCGGTGTTTGGATCCAACGAACTGCTTTCGGCGGCGGCTTCGGTGATATCGGAAGCTGAAGCAGCGTCGATCACGATGGAAATTCAATGTGAAGAAGATATGGTGAACGTGATCAAAGCTAAAATTTCTTCTCATCCTACTTATCCTCGATTGCTCGACGCCTATATTGACTGCCAAAAGGTAGGAGCGCCTCCGGCGATTTCACATTTGTTAGAAGGAATCCGTCAAGAAAGCGACATTTGTAACCGTCACGCTGTAACCACGTGCTTAGGCGTCGATCCTGAACTCGATGAATTCATGGAAACGTACTGCGATATGTTGGTGAAGTACAAATCAGATCTCAAGAGGCCTTTCGACGAAGCAACCACGTTCTTGAATAAGATCGAGCTACAACTTAGTAACCTCTGCAATGGCGCCTTCTCCAGAAGCCTTTCCGATGAAGGAGCTGCCTCGTCGGATGAAGAGTTGAGCGGAGGAGAGATGGAAGCTGTGGAGGCGGAGGCTCAAACCAAAGGCGAGAAAAGGGATCTCAAGGATAAGCTATTACGCAGATTTGGCAGTCATATTAGTAGCTTAAAATTGGAGTTCTCAAAGAAGAAGAAAAAAGGAAAATTACCAAAAGAAGCCAGGCAAACCCTCCTTGAATGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCCGATAAGGTTGCTCTGGCAGAGAGAACAGGGCTTGACCAGAAGCAAATTAACAATTGGTTCATAAATCAGCGGAAACGCCACTGGAAGCCATCAGAGAGTATGCAGTTGGAAGGAATGGATGAGCTTTCTTCAGGTAGATTCTTCAGAGAGGACTGA 975 46.46 MEEMYGLQSTAEYSDKALMSPENLILPPDYQSLLVTSGEFRDRIPVFGSNELLSAAASVISEAEAASITMEIQCEEDMVNVIKAKISSHPTYPRLLDAYIDCQKVGAPPAISHLLEGIRQESDICNRHAVTTCLGVDPELDEFMETYCDMLVKYKSDLKRPFDEATTFLNKIELQLSNLCNGAFSRSLSDEGAASSDEELSGGEMEAVEAEAQTKGEKRDLKDKLLRRFGSHISSLKLEFSKKKKKGKLPKEARQTLLEWWNVHYKWPYPTEADKVALAERTGLDQKQINNWFINQRKRHWKPSESMQLEGMDELSSGRFFRED 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 6949757 6956576 - CmaCh18G007870.1 Cma18g00787 314125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00787 324 Gene3D - 238 314 - -
Cma18g00787 324 Pfam KNOX2 domain 134 180 IPR005541 GO:0003677|GO:0005634
Cma18g00787 324 ProSiteProfiles ELK domain profile. 220 240 IPR005539 GO:0003677
Cma18g00787 324 ProSiteProfiles 'Homeobox' domain profile. 240 303 IPR001356 GO:0003677
Cma18g00787 324 Pfam KNOX1 domain 82 123 IPR005540 GO:0003677|GO:0005634
Cma18g00787 324 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 313 - -
Cma18g00787 324 SUPERFAMILY Homeodomain-like 241 312 IPR009057 -
Cma18g00787 324 SMART ELK_2 220 241 IPR005539 GO:0003677
Cma18g00787 324 CDD homeodomain 252 304 IPR001356 GO:0003677
Cma18g00787 324 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 313 - -
Cma18g00787 324 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Cma18g00787 324 Pfam ELK domain 220 241 IPR005539 GO:0003677
Cma18g00787 324 ProSitePatterns 'Homeobox' domain signature. 278 301 IPR017970 GO:0000981|GO:0006355
Cma18g00787 324 SMART KNOX2_2 130 181 IPR005541 GO:0003677|GO:0005634
Cma18g00787 324 Pfam Homeobox KN domain 260 299 IPR008422 GO:0003677|GO:0006355
Cma18g00787 324 MobiDBLite consensus disorder prediction 191 216 - -
Cma18g00787 324 SMART HOX_1 242 307 IPR001356 GO:0003677
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma05g00030 Cma18g00787 CCT
Cma04g01746 Cma18g00787 CCT
Cma05g00030 Cma18g00787 ECH
Cma04g01746 Cma18g00787 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g01073 Cma-Chr5:8500812 Cma18g00787 Cma-Chr18:6949757 5.32E-81 dispersed
Cma12g01024 Cma-Chr12:8157527 Cma18g00787 Cma-Chr18:6949757 5.19E-69 dispersed
Cma12g00026 Cma-Chr12:100879 Cma18g00787 Cma-Chr18:6949757 2.91E-17 wgd
Cma18g00787 Cma-Chr18:6949757 Cma04g01746 Cma-Chr4:8772054 0 wgd
Cma18g00787 Cma-Chr18:6949757 Cma05g00030 Cma-Chr5:135056 4.23E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
36789 PF03791 KNOX2 1.20E-24 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00787 - - csv:101211876 590.112