Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00794 ATGGGGCTTACGTTCACAAAGCTTTTCAGTCGGCTTTTTGCCAAGAAGGAAATGCGAATTTTGATGGTTGGTCTTGATGCGGCTGGTAAGACAACTATCCTTTACAAGCTCAAGCTCGGCGAGATCGTCACAACAATACCTACCATTGGGTTTAATGTGGAGACTGTAGAGTACAAAAACATCAGCTTCACAGTCTGGGATGTTGGGGGTCAAGACAAGATCCGTCCCTTGTGGAGGCATTATTTCCAGAACACACAGGGTCTCATATTTGTTGTTGACAGCAATGATAGAGATCGAGTTGTTGAGGCCAGGGATGAATTGCATAGGATGTTGAATGAGGATGAGCTGCGAGATGCAGTTCTGCTTGTGTTTGCTAACAAACAAGATCTTCCTAATGCAATGAATGCTGCTGAGATCACTGATAAGCTGGGTCTCCACTCTCTCCGCCAGCGTCACTGGTACATCCAGAGCACTTGCGCCACCTCTGGGGAGGGGCTTTATGAGGGGTTGGATTGGCTCTCCAACAACATTGCTAACAAGTGTAATTTTAATAATCAAGCATGTATGCATGCATATATGTATGAGTTTATGATTTCTGCAGCAAAGAGGAAATGGGTGTGGCTGGGGCTTAGAGACAAGGGAATGGTTATGGGCACTGGCATGGAGCTAGCCTGCATGATGGGCTCCCTCTTGTCCCATCGCTTATCAAGTGAAAGAATTGCTCTGGAAAATGATGCCATATAG 744 45.97 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKCNFNNQACMHAYMYEFMISAAKRKWVWLGLRDKGMVMGTGMELACMMGSLLSHRLSSERIALENDAI 247
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7001250 7005661 + CmaCh18G007940.1 Cma18g00794 314132

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00794 247 Gene3D - 5 187 IPR027417 -
Cma18g00794 247 PANTHER ADP RIBOSYLATION FACTOR-RELATED 1 180 IPR024156 GO:0005525
Cma18g00794 247 PANTHER ADP-RIBOSYLATION FACTOR A1F 1 180 - -
Cma18g00794 247 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 180 IPR027417 -
Cma18g00794 247 CDD Arf1_5_like 18 176 IPR045872 GO:0003924
Cma18g00794 247 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Cma18g00794 247 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Cma18g00794 247 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Cma18g00794 247 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Cma18g00794 247 ProSiteProfiles small GTPase Arf family profile. 11 177 - -
Cma18g00794 247 SMART sar_sub_1 1 177 IPR006689 GO:0003924|GO:0005525
Cma18g00794 247 SMART rab_sub_5 18 180 - -
Cma18g00794 247 SMART arf_sub_2 1 181 - -
Cma18g00794 247 Pfam ADP-ribosylation factor family 5 177 IPR006689 GO:0003924|GO:0005525
Cma18g00794 247 TIGRFAM small_GTP: small GTP-binding protein domain 16 156 IPR005225 GO:0005525
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00794 K07937 ARF1_2; ADP-ribosylation factor 1/2 - sspl:121758967 365.54
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01736 Cma18g00794 CCT
Cma04g01736 Cma18g00794 ECH
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00349 Cma-Chr15:1608479 Cma18g00794 Cma-Chr18:7001250 2.12E-134 dispersed
Cma17g01012 Cma-Chr17:7365651 Cma18g00794 Cma-Chr18:7001250 3.39E-134 dispersed
Cma12g00013 Cma-Chr12:47783 Cma18g00794 Cma-Chr18:7001250 4.52E-80 transposed
Cma11g01436 Cma-Chr11:9457602 Cma18g00794 Cma-Chr18:7001250 2.05E-132 wgd
Cma12g00012 Cma-Chr12:46668 Cma18g00794 Cma-Chr18:7001250 1.31E-27 wgd
Cma14g00658 Cma-Chr14:3283752 Cma18g00794 Cma-Chr18:7001250 6.43E-132 wgd
Cma18g00794 Cma-Chr18:7001250 Cma04g01736 Cma-Chr4:8727945 9.26E-134 wgd
Cma18g00794 Cma-Chr18:7001250 Cma05g00014 Cma-Chr5:60526 1.98E-122 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g680 . Blo16g01160 . Bda11g01269 Bpe13g01466 . . . . Cmo18g00798 . Cma18g00794 . . Sed06g1643 . . Bhi07g01737 Tan04g1244 Cmetu03g0260 . . . . Cla05g02547 . . Cco05g2808 . . Cre05g2705 . . . . Lsi04g00556 Csa05g02332 Chy10g00900 . . . . Bda11g01269 . . . Bma06g00618 . Cmo04g02828 . Cma04g01736 . . . . . . . . . . . . . . . . . . . . . Chy09g00345 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000063 9 18 10 8 7 8 7 10 8 7 8 7 18 10 10 19 7 15 6 8 11 10 12 9 4 7 7 18 10 9 297
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma18g00794 Cma_Chr18 FPKM 144.959747 151.454391 69.290199 66.790398 132.721222 145.486389 133.397751 81.136116 80.997101 78.268616