Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma18g00798 | ATGAGGAAGAATCAGAGAGGAAGAACAATGTCTTCTTCAAAGAATACTTCTATTTCTTCATCACATTCTGATTTGGATTCTTCTCCTCCTCCTTCGCCGCAGTCAGATGGTTTATCGTTGATGTCGAAAGAAGATGCTTCTGAATCGCCCATTGTTTCATCGAAAATTAAATCTCCGCCTGCCGACGACGGAGGTTCACCGTCTTCCACACCTACACCAAACGTTGGATCCTCAACGCCGCCCCCGATTGATTCCTCTAATTCAGGTTCATCCAAAGAGAATCCATCGCCACCTCCTGTAGGTTCCGCTTCCGCTTCCCCACCGCCATCTCCTACTTTTCCTCCTCCTTCTCCTCCTTTGATACCTTCACCACCGCCACCACAACTGCCGTCTGATAGCGGCAGTGATAATCCTCCACCTTCCTCTGTTCCAACAAAAAGCTCTCCGGCATCTCCAGGAAATCCATCTTCTCCAATACCGGGGAATAATCCCTCTACTCCGACAAATAACGGTGCAGCTTCGGGTTCTAATACAGCCAAGGAGCTTCCACCATCTGAATCGACGGATTCTCCTCCTCAATCAGAAAATACAGTCGTGATTCCTTCACCAGGTGCAAATACGGCGAGGGGGAAACGAAATCCGAGTCCACCTCAAGAGGAGACTTCTCCCACATCAGACTCTAACATCTTTCAACCTCCCACAACACCATCCACATCCAATAGTACTCTAGACAACTCACCTCAGTCCTCCGACTCAACGCCGGTGGAAACTCCATTAAGGCAATCCAATGCACCATCGTCACCTTCAAGTAGTCAAACAAAAGTTGCAGTAGGCGTTGTAGTAGTTGGAGTTATTGTAATTGTTATGATTGCCGTAATTTTTATACTCACAAGGAAGAAGAAAAGACGGGGAGACTTGGAGAATGGCCCATACTTGCCTCCTAACAACTTCTGTGAGAAATCAGATGGAAATTACAATCCGGATCAACATAGTGGGAACTCTGGCTCGGCAGAAGGCTTCAATACCCAGGTCCCGCATACTCCTGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGAGACAGAGGCAGTGGAGTGGATTCAGGTGTGATAAACAGTGCTAAGTTCTTTAGCTATGAGGAGTTGATGGAGATTACCTCTGGATTTTCGCGTCAAAACGTTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTTGCTTCCAGATGGGAAGCCAGTGGCTGTGAAGCAACTCAAGGCAAGAAGTGGGCAGGGGGAAAAGGAATTCAAAGCGGAGGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGGCTCTGAGCATCATAAATTGCTCATCTATGAGTTTGTTCCTAATAGGACTCTTGAGCATCATCTCCATGGCGGCAATGAAGTCCCCGTGTTGGAATGGTCCAAAAGACTCAAAATCGCTTTGGGATCTGCAAAGGGCTTGGCGTATCTGCATGAAGATTGCCATCCCAAGATTATTCACAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTCGAGGCGAAGGTTGCAGATTTTGGACTTGCAAAACTAACAAATGATGCAAACACCCACGTTTCAACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTTTTCTCATTTGGGGTTGTTCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCTCTCAGCCTCTAGGGGACGAGAGTTTGGTCGAATGGGCTCGACCTCTTCTCCTTCACGCCATTGAAACTGGGAAGTTCGACGGATTAATAGACCTTCGCCTTGGAAAACGTTATGTGGAAAGTCAAATGTTCAGAATGATCGAAGTAGCAGCTGCCTGCGTTCGTCATTCAGCTCCCAATAGGCCTTGCATGGTTCAGGTGGTGAGAGCTCTGGACATTGAAAGTGACATGTCCGACCTCACCAATGGTGTCAAATTTGGGCAGAGCACTACCTATGATTCTGAACAATACAGTGAAGACATTTCTAACTTCAGGAAACTGGCGTTCGAAGACAGCCTCGACTACGATGGTTACAGTAGCGAACACAATTCCGGAGAAGTGAATGCAACTCGGGAATCATGGAGAAGCCAAAATTACTCGAGTGGTGAATCAGAAACTCGAGCTTTTAAGGGACAAAGTGGCGGCGTAACACACAGTCAACATACTGGACGATAA | 2271 | 47.07 | MRKNQRGRTMSSSKNTSISSSHSDLDSSPPPSPQSDGLSLMSKEDASESPIVSSKIKSPPADDGGSPSSTPTPNVGSSTPPPIDSSNSGSSKENPSPPPVGSASASPPPSPTFPPPSPPLIPSPPPPQLPSDSGSDNPPPSSVPTKSSPASPGNPSSPIPGNNPSTPTNNGAASGSNTAKELPPSESTDSPPQSENTVVIPSPGANTARGKRNPSPPQEETSPTSDSNIFQPPTTPSTSNSTLDNSPQSSDSTPVETPLRQSNAPSSPSSSQTKVAVGVVVVGVIVIVMIAVIFILTRKKKRRGDLENGPYLPPNNFCEKSDGNYNPDQHSGNSGSAEGFNTQVPHTPVGNSFGSQKGTGDRGSGVDSGVINSAKFFSYEELMEITSGFSRQNVLGEGGFGCVYQGLLPDGKPVAVKQLKARSGQGEKEFKAEVEIISRVHHRHLVSLVGYCGSEHHKLLIYEFVPNRTLEHHLHGGNEVPVLEWSKRLKIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDDAFEAKVADFGLAKLTNDANTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPSQPLGDESLVEWARPLLLHAIETGKFDGLIDLRLGKRYVESQMFRMIEVAAACVRHSAPNRPCMVQVVRALDIESDMSDLTNGVKFGQSTTYDSEQYSEDISNFRKLAFEDSLDYDGYSSEHNSGEVNATRESWRSQNYSSGESETRAFKGQSGGVTHSQHTGR | 756 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
18 | 7019254 | 7022362 | - | CmaCh18G007980.1 | Cma18g00798 | 314136 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 304 | 366 | - | - | |
Cma18g00798 | 756 | Gene3D | Phosphorylase Kinase; domain 1 | 370 | 464 | - | - | |
Cma18g00798 | 756 | SUPERFAMILY | Protein kinase-like (PK-like) | 369 | 663 | IPR011009 | - | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 163 | 273 | - | - | |
Cma18g00798 | 756 | ProSitePatterns | Protein kinases ATP-binding region signature. | 395 | 417 | IPR017441 | GO:0005524 | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 712 | 756 | - | - | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 1 | 273 | - | - | |
Cma18g00798 | 756 | Pfam | Protein kinase domain | 390 | 591 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 8 | 54 | - | - | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 100 | 134 | - | - | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 319 | 362 | - | - | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 63 | 99 | - | - | |
Cma18g00798 | 756 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 510 | 522 | IPR008271 | GO:0004672|GO:0006468 | |
Cma18g00798 | 756 | SMART | serkin_6 | 389 | 641 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00798 | 756 | Gene3D | Transferase(Phosphotransferase) domain 1 | 465 | 680 | - | - | |
Cma18g00798 | 756 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED | 118 | 729 | - | - | |
Cma18g00798 | 756 | PANTHER | PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 | 118 | 729 | - | - | |
Cma18g00798 | 756 | ProSiteProfiles | Protein kinase domain profile. | 389 | 669 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma18g00798 | 756 | MobiDBLite | consensus disorder prediction | 142 | 162 | - | - | |
Cma18g00798 | 756 | CDD | STKc_IRAK | 395 | 664 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01733 | Cma18g00798 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma15g00198 | Cma-Chr15:963133 | Cma18g00798 | Cma-Chr18:7019254 | 3.20E-170 | dispersed | |
Cma18g00798 | Cma-Chr18:7019254 | Cma18g01062 | Cma-Chr18:8802449 | 1.94E-155 | dispersed | |
Cma18g00798 | Cma-Chr18:7019254 | Cma04g01733 | Cma-Chr4:8715449 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
69302 | PF00069 | Pkinase | 6.60E-45 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma18g00798 | - | - | csv:101215732 | 875.93 |