Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma18g00798 ATGAGGAAGAATCAGAGAGGAAGAACAATGTCTTCTTCAAAGAATACTTCTATTTCTTCATCACATTCTGATTTGGATTCTTCTCCTCCTCCTTCGCCGCAGTCAGATGGTTTATCGTTGATGTCGAAAGAAGATGCTTCTGAATCGCCCATTGTTTCATCGAAAATTAAATCTCCGCCTGCCGACGACGGAGGTTCACCGTCTTCCACACCTACACCAAACGTTGGATCCTCAACGCCGCCCCCGATTGATTCCTCTAATTCAGGTTCATCCAAAGAGAATCCATCGCCACCTCCTGTAGGTTCCGCTTCCGCTTCCCCACCGCCATCTCCTACTTTTCCTCCTCCTTCTCCTCCTTTGATACCTTCACCACCGCCACCACAACTGCCGTCTGATAGCGGCAGTGATAATCCTCCACCTTCCTCTGTTCCAACAAAAAGCTCTCCGGCATCTCCAGGAAATCCATCTTCTCCAATACCGGGGAATAATCCCTCTACTCCGACAAATAACGGTGCAGCTTCGGGTTCTAATACAGCCAAGGAGCTTCCACCATCTGAATCGACGGATTCTCCTCCTCAATCAGAAAATACAGTCGTGATTCCTTCACCAGGTGCAAATACGGCGAGGGGGAAACGAAATCCGAGTCCACCTCAAGAGGAGACTTCTCCCACATCAGACTCTAACATCTTTCAACCTCCCACAACACCATCCACATCCAATAGTACTCTAGACAACTCACCTCAGTCCTCCGACTCAACGCCGGTGGAAACTCCATTAAGGCAATCCAATGCACCATCGTCACCTTCAAGTAGTCAAACAAAAGTTGCAGTAGGCGTTGTAGTAGTTGGAGTTATTGTAATTGTTATGATTGCCGTAATTTTTATACTCACAAGGAAGAAGAAAAGACGGGGAGACTTGGAGAATGGCCCATACTTGCCTCCTAACAACTTCTGTGAGAAATCAGATGGAAATTACAATCCGGATCAACATAGTGGGAACTCTGGCTCGGCAGAAGGCTTCAATACCCAGGTCCCGCATACTCCTGTTGGAAATAGCTTTGGGAGTCAAAAAGGAACAGGAGACAGAGGCAGTGGAGTGGATTCAGGTGTGATAAACAGTGCTAAGTTCTTTAGCTATGAGGAGTTGATGGAGATTACCTCTGGATTTTCGCGTCAAAACGTTCTTGGGGAAGGTGGGTTTGGATGTGTTTACCAGGGTTTGCTTCCAGATGGGAAGCCAGTGGCTGTGAAGCAACTCAAGGCAAGAAGTGGGCAGGGGGAAAAGGAATTCAAAGCGGAGGTTGAGATTATCAGTCGTGTTCATCATCGGCATTTGGTGTCTTTAGTGGGCTACTGCGGCTCTGAGCATCATAAATTGCTCATCTATGAGTTTGTTCCTAATAGGACTCTTGAGCATCATCTCCATGGCGGCAATGAAGTCCCCGTGTTGGAATGGTCCAAAAGACTCAAAATCGCTTTGGGATCTGCAAAGGGCTTGGCGTATCTGCATGAAGATTGCCATCCCAAGATTATTCACAGAGACATCAAGTCAGCCAACATTTTGCTGGATGATGCTTTCGAGGCGAAGGTTGCAGATTTTGGACTTGCAAAACTAACAAATGATGCAAACACCCACGTTTCAACTCGTGTCATGGGGACATTTGGATACATGGCGCCCGAGTACGCATCAAGTGGGAAATTGACAGACAGATCAGATGTTTTCTCATTTGGGGTTGTTCTTCTTGAGCTTATTACTGGTCGTAAGCCTGTTGATCCCTCTCAGCCTCTAGGGGACGAGAGTTTGGTCGAATGGGCTCGACCTCTTCTCCTTCACGCCATTGAAACTGGGAAGTTCGACGGATTAATAGACCTTCGCCTTGGAAAACGTTATGTGGAAAGTCAAATGTTCAGAATGATCGAAGTAGCAGCTGCCTGCGTTCGTCATTCAGCTCCCAATAGGCCTTGCATGGTTCAGGTGGTGAGAGCTCTGGACATTGAAAGTGACATGTCCGACCTCACCAATGGTGTCAAATTTGGGCAGAGCACTACCTATGATTCTGAACAATACAGTGAAGACATTTCTAACTTCAGGAAACTGGCGTTCGAAGACAGCCTCGACTACGATGGTTACAGTAGCGAACACAATTCCGGAGAAGTGAATGCAACTCGGGAATCATGGAGAAGCCAAAATTACTCGAGTGGTGAATCAGAAACTCGAGCTTTTAAGGGACAAAGTGGCGGCGTAACACACAGTCAACATACTGGACGATAA 2271 47.07 MRKNQRGRTMSSSKNTSISSSHSDLDSSPPPSPQSDGLSLMSKEDASESPIVSSKIKSPPADDGGSPSSTPTPNVGSSTPPPIDSSNSGSSKENPSPPPVGSASASPPPSPTFPPPSPPLIPSPPPPQLPSDSGSDNPPPSSVPTKSSPASPGNPSSPIPGNNPSTPTNNGAASGSNTAKELPPSESTDSPPQSENTVVIPSPGANTARGKRNPSPPQEETSPTSDSNIFQPPTTPSTSNSTLDNSPQSSDSTPVETPLRQSNAPSSPSSSQTKVAVGVVVVGVIVIVMIAVIFILTRKKKRRGDLENGPYLPPNNFCEKSDGNYNPDQHSGNSGSAEGFNTQVPHTPVGNSFGSQKGTGDRGSGVDSGVINSAKFFSYEELMEITSGFSRQNVLGEGGFGCVYQGLLPDGKPVAVKQLKARSGQGEKEFKAEVEIISRVHHRHLVSLVGYCGSEHHKLLIYEFVPNRTLEHHLHGGNEVPVLEWSKRLKIALGSAKGLAYLHEDCHPKIIHRDIKSANILLDDAFEAKVADFGLAKLTNDANTHVSTRVMGTFGYMAPEYASSGKLTDRSDVFSFGVVLLELITGRKPVDPSQPLGDESLVEWARPLLLHAIETGKFDGLIDLRLGKRYVESQMFRMIEVAAACVRHSAPNRPCMVQVVRALDIESDMSDLTNGVKFGQSTTYDSEQYSEDISNFRKLAFEDSLDYDGYSSEHNSGEVNATRESWRSQNYSSGESETRAFKGQSGGVTHSQHTGR 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
18 7019254 7022362 - CmaCh18G007980.1 Cma18g00798 314136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma18g00798 756 MobiDBLite consensus disorder prediction 304 366 - -
Cma18g00798 756 Gene3D Phosphorylase Kinase; domain 1 370 464 - -
Cma18g00798 756 SUPERFAMILY Protein kinase-like (PK-like) 369 663 IPR011009 -
Cma18g00798 756 MobiDBLite consensus disorder prediction 163 273 - -
Cma18g00798 756 ProSitePatterns Protein kinases ATP-binding region signature. 395 417 IPR017441 GO:0005524
Cma18g00798 756 MobiDBLite consensus disorder prediction 712 756 - -
Cma18g00798 756 MobiDBLite consensus disorder prediction 1 273 - -
Cma18g00798 756 Pfam Protein kinase domain 390 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00798 756 MobiDBLite consensus disorder prediction 8 54 - -
Cma18g00798 756 MobiDBLite consensus disorder prediction 100 134 - -
Cma18g00798 756 MobiDBLite consensus disorder prediction 319 362 - -
Cma18g00798 756 MobiDBLite consensus disorder prediction 63 99 - -
Cma18g00798 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 510 522 IPR008271 GO:0004672|GO:0006468
Cma18g00798 756 SMART serkin_6 389 641 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00798 756 Gene3D Transferase(Phosphotransferase) domain 1 465 680 - -
Cma18g00798 756 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK13-RELATED 118 729 - -
Cma18g00798 756 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 118 729 - -
Cma18g00798 756 ProSiteProfiles Protein kinase domain profile. 389 669 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma18g00798 756 MobiDBLite consensus disorder prediction 142 162 - -
Cma18g00798 756 CDD STKc_IRAK 395 664 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01733 Cma18g00798 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00198 Cma-Chr15:963133 Cma18g00798 Cma-Chr18:7019254 3.20E-170 dispersed
Cma18g00798 Cma-Chr18:7019254 Cma18g01062 Cma-Chr18:8802449 1.94E-155 dispersed
Cma18g00798 Cma-Chr18:7019254 Cma04g01733 Cma-Chr4:8715449 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
69302 PF00069 Pkinase 6.60E-45 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma18g00798 - - csv:101215732 875.93